Amino acid dipepetide frequency for Mungbean yellow mosaic virus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.808AlaAla: 4.808 ± 0.898
0.801AlaCys: 0.801 ± 0.771
1.603AlaAsp: 1.603 ± 0.932
3.205AlaGlu: 3.205 ± 1.247
1.603AlaPhe: 1.603 ± 0.785
0.801AlaGly: 0.801 ± 0.771
1.603AlaHis: 1.603 ± 0.932
4.006AlaIle: 4.006 ± 1.165
5.609AlaLys: 5.609 ± 2.135
6.41AlaLeu: 6.41 ± 3.213
0.0AlaMet: 0.0 ± 0.0
2.404AlaAsn: 2.404 ± 0.927
2.404AlaPro: 2.404 ± 1.222
1.603AlaGln: 1.603 ± 0.957
2.404AlaArg: 2.404 ± 1.382
6.41AlaSer: 6.41 ± 2.247
6.41AlaThr: 6.41 ± 2.518
0.0AlaVal: 0.0 ± 0.0
0.801AlaTrp: 0.801 ± 0.611
1.603AlaTyr: 1.603 ± 0.785
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.801CysGlu: 0.801 ± 0.771
1.603CysPhe: 1.603 ± 1.355
3.205CysGly: 3.205 ± 1.315
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.801CysLys: 0.801 ± 0.771
0.801CysLeu: 0.801 ± 1.014
0.801CysMet: 0.801 ± 0.782
1.603CysAsn: 1.603 ± 1.223
1.603CysPro: 1.603 ± 0.785
0.801CysGln: 0.801 ± 0.611
1.603CysArg: 1.603 ± 0.896
0.801CysSer: 0.801 ± 0.698
1.603CysThr: 1.603 ± 0.853
1.603CysVal: 1.603 ± 1.542
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.404AspAla: 2.404 ± 1.834
0.0AspCys: 0.0 ± 0.0
0.801AspAsp: 0.801 ± 0.611
2.404AspGlu: 2.404 ± 1.098
2.404AspPhe: 2.404 ± 1.403
3.205AspGly: 3.205 ± 1.766
1.603AspHis: 1.603 ± 0.785
1.603AspIle: 1.603 ± 0.853
4.006AspLys: 4.006 ± 2.101
4.808AspLeu: 4.808 ± 0.872
0.0AspMet: 0.0 ± 0.0
2.404AspAsn: 2.404 ± 0.917
3.205AspPro: 3.205 ± 1.027
2.404AspGln: 2.404 ± 1.683
3.205AspArg: 3.205 ± 1.706
1.603AspSer: 1.603 ± 0.725
1.603AspThr: 1.603 ± 0.853
5.609AspVal: 5.609 ± 1.147
0.801AspTrp: 0.801 ± 0.611
1.603AspTyr: 1.603 ± 0.785
0.0AspXaa: 0.0 ± 0.0
Glu
4.006GluAla: 4.006 ± 1.757
0.0GluCys: 0.0 ± 0.0
3.205GluAsp: 3.205 ± 1.187
1.603GluGlu: 1.603 ± 0.932
2.404GluPhe: 2.404 ± 1.222
2.404GluGly: 2.404 ± 1.098
0.801GluHis: 0.801 ± 1.014
0.0GluIle: 0.0 ± 0.0
1.603GluLys: 1.603 ± 0.957
4.808GluLeu: 4.808 ± 1.855
0.0GluMet: 0.0 ± 0.0
4.006GluAsn: 4.006 ± 2.216
3.205GluPro: 3.205 ± 0.922
0.801GluGln: 0.801 ± 0.771
1.603GluArg: 1.603 ± 1.223
1.603GluSer: 1.603 ± 0.979
0.801GluThr: 0.801 ± 0.857
4.006GluVal: 4.006 ± 1.834
0.801GluTrp: 0.801 ± 0.698
0.801GluTyr: 0.801 ± 0.611
0.0GluXaa: 0.0 ± 0.0
Phe
1.603PheAla: 1.603 ± 0.785
1.603PheCys: 1.603 ± 1.156
2.404PheAsp: 2.404 ± 1.098
3.205PheGlu: 3.205 ± 1.13
0.801PhePhe: 0.801 ± 0.611
3.205PheGly: 3.205 ± 1.706
0.801PheHis: 0.801 ± 0.611
3.205PheIle: 3.205 ± 2.077
4.006PheLys: 4.006 ± 0.946
2.404PheLeu: 2.404 ± 1.326
0.801PheMet: 0.801 ± 0.611
2.404PheAsn: 2.404 ± 1.487
1.603PhePro: 1.603 ± 1.132
2.404PheGln: 2.404 ± 1.098
4.006PheArg: 4.006 ± 2.189
2.404PheSer: 2.404 ± 1.326
2.404PheThr: 2.404 ± 2.0
1.603PheVal: 1.603 ± 1.396
0.0PheTrp: 0.0 ± 0.0
2.404PheTyr: 2.404 ± 1.367
0.0PheXaa: 0.0 ± 0.0
Gly
2.404GlyAla: 2.404 ± 0.9
1.603GlyCys: 1.603 ± 0.725
3.205GlyAsp: 3.205 ± 1.187
0.801GlyGlu: 0.801 ± 0.611
1.603GlyPhe: 1.603 ± 1.299
4.808GlyGly: 4.808 ± 1.497
1.603GlyHis: 1.603 ± 0.785
2.404GlyIle: 2.404 ± 0.644
5.609GlyLys: 5.609 ± 2.454
3.205GlyLeu: 3.205 ± 2.228
2.404GlyMet: 2.404 ± 1.244
3.205GlyAsn: 3.205 ± 1.316
4.006GlyPro: 4.006 ± 1.212
1.603GlyGln: 1.603 ± 1.542
1.603GlyArg: 1.603 ± 1.223
5.609GlySer: 5.609 ± 1.587
0.801GlyThr: 0.801 ± 0.771
3.205GlyVal: 3.205 ± 1.959
0.0GlyTrp: 0.0 ± 0.0
1.603GlyTyr: 1.603 ± 0.956
0.0GlyXaa: 0.0 ± 0.0
His
1.603HisAla: 1.603 ± 1.109
0.0HisCys: 0.0 ± 0.0
1.603HisAsp: 1.603 ± 1.218
0.801HisGlu: 0.801 ± 0.611
0.801HisPhe: 0.801 ± 0.611
3.205HisGly: 3.205 ± 1.096
0.801HisHis: 0.801 ± 0.906
2.404HisIle: 2.404 ± 1.301
0.801HisLys: 0.801 ± 0.906
4.006HisLeu: 4.006 ± 1.107
1.603HisMet: 1.603 ± 1.173
2.404HisAsn: 2.404 ± 1.326
1.603HisPro: 1.603 ± 1.223
1.603HisGln: 1.603 ± 1.156
2.404HisArg: 2.404 ± 0.986
2.404HisSer: 2.404 ± 1.325
3.205HisThr: 3.205 ± 1.634
3.205HisVal: 3.205 ± 1.216
0.0HisTrp: 0.0 ± 0.0
2.404HisTyr: 2.404 ± 1.326
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
0.801IleCys: 0.801 ± 0.771
1.603IleAsp: 1.603 ± 0.785
0.801IleGlu: 0.801 ± 0.611
4.006IlePhe: 4.006 ± 1.168
1.603IleGly: 1.603 ± 0.979
0.801IleHis: 0.801 ± 1.014
0.801IleIle: 0.801 ± 1.014
4.808IleLys: 4.808 ± 1.48
5.609IleLeu: 5.609 ± 2.332
1.603IleMet: 1.603 ± 1.811
2.404IleAsn: 2.404 ± 1.354
1.603IlePro: 1.603 ± 0.785
1.603IleGln: 1.603 ± 1.565
5.609IleArg: 5.609 ± 1.82
8.013IleSer: 8.013 ± 1.77
4.006IleThr: 4.006 ± 2.24
5.609IleVal: 5.609 ± 3.13
1.603IleTrp: 1.603 ± 1.542
4.006IleTyr: 4.006 ± 0.963
0.0IleXaa: 0.0 ± 0.0
Lys
3.205LysAla: 3.205 ± 1.485
1.603LysCys: 1.603 ± 0.979
2.404LysAsp: 2.404 ± 1.222
4.006LysGlu: 4.006 ± 2.192
4.006LysPhe: 4.006 ± 1.497
2.404LysGly: 2.404 ± 1.683
2.404LysHis: 2.404 ± 0.989
4.808LysIle: 4.808 ± 1.954
3.205LysLys: 3.205 ± 1.296
8.814LysLeu: 8.814 ± 2.806
0.801LysMet: 0.801 ± 0.698
7.212LysAsn: 7.212 ± 2.262
3.205LysPro: 3.205 ± 1.13
1.603LysGln: 1.603 ± 0.785
2.404LysArg: 2.404 ± 1.768
4.808LysSer: 4.808 ± 1.635
2.404LysThr: 2.404 ± 1.013
4.006LysVal: 4.006 ± 1.395
0.801LysTrp: 0.801 ± 1.014
3.205LysTyr: 3.205 ± 0.825
0.0LysXaa: 0.0 ± 0.0
Leu
3.205LeuAla: 3.205 ± 2.097
1.603LeuCys: 1.603 ± 1.223
5.609LeuAsp: 5.609 ± 2.492
1.603LeuGlu: 1.603 ± 0.932
3.205LeuPhe: 3.205 ± 1.296
6.41LeuGly: 6.41 ± 1.383
4.808LeuHis: 4.808 ± 1.425
4.006LeuIle: 4.006 ± 1.831
7.212LeuLys: 7.212 ± 1.498
8.814LeuLeu: 8.814 ± 2.948
1.603LeuMet: 1.603 ± 1.355
5.609LeuAsn: 5.609 ± 2.233
3.205LeuPro: 3.205 ± 1.272
4.808LeuGln: 4.808 ± 1.668
8.814LeuArg: 8.814 ± 2.338
8.013LeuSer: 8.013 ± 1.781
5.609LeuThr: 5.609 ± 2.109
3.205LeuVal: 3.205 ± 1.269
2.404LeuTrp: 2.404 ± 1.2
4.006LeuTyr: 4.006 ± 1.918
0.0LeuXaa: 0.0 ± 0.0
Met
1.603MetAla: 1.603 ± 1.156
0.801MetCys: 0.801 ± 0.782
2.404MetAsp: 2.404 ± 0.917
2.404MetGlu: 2.404 ± 1.719
2.404MetPhe: 2.404 ± 1.487
0.801MetGly: 0.801 ± 0.611
2.404MetHis: 2.404 ± 1.44
1.603MetIle: 1.603 ± 1.302
0.0MetLys: 0.0 ± 0.0
1.603MetLeu: 1.603 ± 1.132
0.0MetMet: 0.0 ± 0.0
0.801MetAsn: 0.801 ± 0.698
1.603MetPro: 1.603 ± 0.932
0.801MetGln: 0.801 ± 0.906
0.0MetArg: 0.0 ± 0.0
1.603MetSer: 1.603 ± 0.853
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
2.404MetTrp: 2.404 ± 0.989
2.404MetTyr: 2.404 ± 0.986
0.0MetXaa: 0.0 ± 0.0
Asn
4.006AsnAla: 4.006 ± 1.212
2.404AsnCys: 2.404 ± 1.2
3.205AsnAsp: 3.205 ± 1.215
1.603AsnGlu: 1.603 ± 0.725
0.801AsnPhe: 0.801 ± 0.698
2.404AsnGly: 2.404 ± 0.986
3.205AsnHis: 3.205 ± 2.343
4.808AsnIle: 4.808 ± 1.236
0.801AsnLys: 0.801 ± 0.611
4.006AsnLeu: 4.006 ± 1.308
3.205AsnMet: 3.205 ± 1.176
2.404AsnAsn: 2.404 ± 1.387
2.404AsnPro: 2.404 ± 0.917
0.0AsnGln: 0.0 ± 0.0
2.404AsnArg: 2.404 ± 1.355
5.609AsnSer: 5.609 ± 1.973
4.006AsnThr: 4.006 ± 1.436
7.212AsnVal: 7.212 ± 1.816
0.0AsnTrp: 0.0 ± 0.0
4.808AsnTyr: 4.808 ± 1.166
0.0AsnXaa: 0.0 ± 0.0
Pro
2.404ProAla: 2.404 ± 1.367
0.801ProCys: 0.801 ± 0.771
3.205ProAsp: 3.205 ± 1.451
1.603ProGlu: 1.603 ± 0.957
0.801ProPhe: 0.801 ± 0.771
0.801ProGly: 0.801 ± 0.611
2.404ProHis: 2.404 ± 1.834
1.603ProIle: 1.603 ± 0.785
3.205ProLys: 3.205 ± 1.247
6.41ProLeu: 6.41 ± 1.153
0.801ProMet: 0.801 ± 0.771
0.801ProAsn: 0.801 ± 0.611
0.801ProPro: 0.801 ± 0.782
1.603ProGln: 1.603 ± 1.156
4.808ProArg: 4.808 ± 1.612
7.212ProSer: 7.212 ± 2.219
3.205ProThr: 3.205 ± 1.23
2.404ProVal: 2.404 ± 0.644
0.0ProTrp: 0.0 ± 0.0
3.205ProTyr: 3.205 ± 2.007
0.0ProXaa: 0.0 ± 0.0
Gln
4.006GlnAla: 4.006 ± 1.548
0.0GlnCys: 0.0 ± 0.0
0.801GlnAsp: 0.801 ± 0.771
1.603GlnGlu: 1.603 ± 0.725
2.404GlnPhe: 2.404 ± 1.222
1.603GlnGly: 1.603 ± 0.957
2.404GlnHis: 2.404 ± 1.319
0.801GlnIle: 0.801 ± 0.906
0.801GlnLys: 0.801 ± 0.698
3.205GlnLeu: 3.205 ± 2.711
1.603GlnMet: 1.603 ± 1.355
0.0GlnAsn: 0.0 ± 0.0
0.801GlnPro: 0.801 ± 0.857
0.0GlnGln: 0.0 ± 0.0
1.603GlnArg: 1.603 ± 0.785
3.205GlnSer: 3.205 ± 1.622
0.801GlnThr: 0.801 ± 0.611
3.205GlnVal: 3.205 ± 1.531
0.0GlnTrp: 0.0 ± 0.0
4.006GlnTyr: 4.006 ± 1.463
0.0GlnXaa: 0.0 ± 0.0
Arg
1.603ArgAla: 1.603 ± 1.046
3.205ArgCys: 3.205 ± 1.809
2.404ArgAsp: 2.404 ± 1.367
3.205ArgGlu: 3.205 ± 1.571
3.205ArgPhe: 3.205 ± 0.922
3.205ArgGly: 3.205 ± 1.184
1.603ArgHis: 1.603 ± 0.932
4.808ArgIle: 4.808 ± 1.172
4.808ArgLys: 4.808 ± 1.419
5.609ArgLeu: 5.609 ± 1.56
0.801ArgMet: 0.801 ± 0.782
2.404ArgAsn: 2.404 ± 1.752
4.808ArgPro: 4.808 ± 1.301
1.603ArgGln: 1.603 ± 1.355
5.609ArgArg: 5.609 ± 3.757
4.006ArgSer: 4.006 ± 0.966
4.006ArgThr: 4.006 ± 1.834
2.404ArgVal: 2.404 ± 1.367
1.603ArgTrp: 1.603 ± 0.853
2.404ArgTyr: 2.404 ± 1.656
0.0ArgXaa: 0.0 ± 0.0
Ser
5.609SerAla: 5.609 ± 3.376
0.801SerCys: 0.801 ± 0.698
2.404SerAsp: 2.404 ± 1.222
0.801SerGlu: 0.801 ± 0.611
5.609SerPhe: 5.609 ± 1.815
4.006SerGly: 4.006 ± 1.877
3.205SerHis: 3.205 ± 1.326
6.41SerIle: 6.41 ± 1.712
8.814SerLys: 8.814 ± 2.35
8.013SerLeu: 8.013 ± 2.671
2.404SerMet: 2.404 ± 1.719
8.013SerAsn: 8.013 ± 1.942
2.404SerPro: 2.404 ± 0.989
0.801SerGln: 0.801 ± 0.906
4.006SerArg: 4.006 ± 1.426
8.013SerSer: 8.013 ± 2.583
6.41SerThr: 6.41 ± 1.556
2.404SerVal: 2.404 ± 1.053
0.801SerTrp: 0.801 ± 0.611
4.006SerTyr: 4.006 ± 1.702
0.0SerXaa: 0.0 ± 0.0
Thr
4.006ThrAla: 4.006 ± 1.918
0.0ThrCys: 0.0 ± 0.0
1.603ThrAsp: 1.603 ± 0.853
2.404ThrGlu: 2.404 ± 1.38
1.603ThrPhe: 1.603 ± 0.994
4.808ThrGly: 4.808 ± 1.238
4.808ThrHis: 4.808 ± 2.143
4.006ThrIle: 4.006 ± 1.963
4.808ThrLys: 4.808 ± 2.185
3.205ThrLeu: 3.205 ± 1.211
2.404ThrMet: 2.404 ± 0.936
2.404ThrAsn: 2.404 ± 1.769
4.006ThrPro: 4.006 ± 1.382
2.404ThrGln: 2.404 ± 0.9
2.404ThrArg: 2.404 ± 0.644
4.808ThrSer: 4.808 ± 2.471
1.603ThrThr: 1.603 ± 0.994
3.205ThrVal: 3.205 ± 2.471
2.404ThrTrp: 2.404 ± 2.079
0.801ThrTyr: 0.801 ± 0.611
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
0.801ValCys: 0.801 ± 0.611
4.006ValAsp: 4.006 ± 2.399
3.205ValGlu: 3.205 ± 1.775
1.603ValPhe: 1.603 ± 1.089
0.801ValGly: 0.801 ± 0.771
0.0ValHis: 0.0 ± 0.0
5.609ValIle: 5.609 ± 1.064
4.006ValLys: 4.006 ± 1.181
5.609ValLeu: 5.609 ± 2.361
0.801ValMet: 0.801 ± 0.771
6.41ValAsn: 6.41 ± 2.079
3.205ValPro: 3.205 ± 1.451
4.808ValGln: 4.808 ± 1.544
4.006ValArg: 4.006 ± 2.063
5.609ValSer: 5.609 ± 0.938
4.808ValThr: 4.808 ± 3.122
4.006ValVal: 4.006 ± 2.193
0.0ValTrp: 0.0 ± 0.0
2.404ValTyr: 2.404 ± 1.743
0.0ValXaa: 0.0 ± 0.0
Trp
2.404TrpAla: 2.404 ± 1.834
0.0TrpCys: 0.0 ± 0.0
0.801TrpAsp: 0.801 ± 0.782
0.801TrpGlu: 0.801 ± 0.906
0.801TrpPhe: 0.801 ± 0.857
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.801TrpMet: 0.801 ± 0.771
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.801TrpGln: 0.801 ± 0.611
1.603TrpArg: 1.603 ± 1.218
1.603TrpSer: 1.603 ± 1.396
3.205TrpThr: 3.205 ± 1.365
0.801TrpVal: 0.801 ± 0.771
0.0TrpTrp: 0.0 ± 0.0
0.801TrpTyr: 0.801 ± 0.611
0.0TrpXaa: 0.0 ± 0.0
Tyr
5.609TyrAla: 5.609 ± 2.419
0.801TyrCys: 0.801 ± 0.698
2.404TyrAsp: 2.404 ± 1.469
1.603TyrGlu: 1.603 ± 1.089
1.603TyrPhe: 1.603 ± 0.725
1.603TyrGly: 1.603 ± 1.046
1.603TyrHis: 1.603 ± 0.957
4.006TyrIle: 4.006 ± 1.53
2.404TyrLys: 2.404 ± 0.9
6.41TyrLeu: 6.41 ± 2.368
2.404TyrMet: 2.404 ± 1.15
2.404TyrAsn: 2.404 ± 0.644
2.404TyrPro: 2.404 ± 0.927
0.801TyrGln: 0.801 ± 0.771
3.205TyrArg: 3.205 ± 2.471
1.603TyrSer: 1.603 ± 1.223
0.801TyrThr: 0.801 ± 0.611
4.006TyrVal: 4.006 ± 0.891
0.0TyrTrp: 0.0 ± 0.0
0.801TyrTyr: 0.801 ± 0.771
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1249 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski