Garlic virus C

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Allexivirus; Acarallexivirus

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|O55602|O55602_9VIRU 27kDa protein OS=Garlic virus C OX=12431 PE=4 SV=1
MM1 pKa = 6.78TTVQKK6 pKa = 11.0LLDD9 pKa = 4.13QISDD13 pKa = 3.73PNARR17 pKa = 11.84AAYY20 pKa = 9.74SQEE23 pKa = 4.07CLSAAKK29 pKa = 10.15NAATKK34 pKa = 11.03AMTIAPYY41 pKa = 10.82AVTQTEE47 pKa = 4.29ALTLEE52 pKa = 4.81RR53 pKa = 11.84IGITTSPFATTSHH66 pKa = 4.89THH68 pKa = 5.93AADD71 pKa = 4.1KK72 pKa = 10.63IIEE75 pKa = 4.22NDD77 pKa = 3.35CLEE80 pKa = 4.92IISHH84 pKa = 6.31YY85 pKa = 10.16LPKK88 pKa = 10.92DD89 pKa = 3.94PITLIQLKK97 pKa = 10.09RR98 pKa = 11.84SKK100 pKa = 10.81LHH102 pKa = 5.53LLKK105 pKa = 10.72RR106 pKa = 11.84GPTDD110 pKa = 4.16DD111 pKa = 5.33AFQNYY116 pKa = 7.45CHH118 pKa = 6.57EE119 pKa = 4.78PKK121 pKa = 10.52DD122 pKa = 3.63VLRR125 pKa = 11.84FGLTNPHH132 pKa = 6.08TCPTVTTSCAVISDD146 pKa = 4.03TLHH149 pKa = 6.41FMSSQQLWTLFARR162 pKa = 11.84NPALQRR168 pKa = 11.84LYY170 pKa = 9.83GTLVLPVEE178 pKa = 4.86ALHH181 pKa = 6.49KK182 pKa = 10.57LPSLFPEE189 pKa = 4.6IYY191 pKa = 10.22KK192 pKa = 10.54LEE194 pKa = 4.4YY195 pKa = 9.26YY196 pKa = 10.04DD197 pKa = 3.87KK198 pKa = 10.74HH199 pKa = 5.5FAYY202 pKa = 10.0MPGGHH207 pKa = 6.74GGGAYY212 pKa = 8.55IHH214 pKa = 7.06SYY216 pKa = 8.85GTLKK220 pKa = 10.24WLSTAQIGSGLNHH233 pKa = 6.82LSIEE237 pKa = 4.31KK238 pKa = 10.16IEE240 pKa = 4.33TKK242 pKa = 10.04AAHH245 pKa = 6.97HH246 pKa = 6.42IMVIQRR252 pKa = 11.84RR253 pKa = 11.84RR254 pKa = 11.84PEE256 pKa = 4.51LPWPLPPVWVYY267 pKa = 10.41HH268 pKa = 6.16ASDD271 pKa = 3.93YY272 pKa = 11.61VKK274 pKa = 10.48LPEE277 pKa = 4.04IFYY280 pKa = 8.66PTEE283 pKa = 4.03ANVQRR288 pKa = 11.84PYY290 pKa = 10.24PHH292 pKa = 6.9VFIKK296 pKa = 10.55RR297 pKa = 11.84LQLYY301 pKa = 8.31CFSVKK306 pKa = 10.2AVSLRR311 pKa = 11.84DD312 pKa = 3.18IFAKK316 pKa = 10.0IRR318 pKa = 11.84QVLPTEE324 pKa = 3.8EE325 pKa = 4.22LARR328 pKa = 11.84FSTADD333 pKa = 4.67LIRR336 pKa = 11.84LANYY340 pKa = 10.44LLFITGMQQTSDD352 pKa = 3.74YY353 pKa = 10.41QSPLMEE359 pKa = 4.49SLFGKK364 pKa = 10.24LCLSIRR370 pKa = 11.84ARR372 pKa = 11.84IRR374 pKa = 11.84EE375 pKa = 4.02FFQNLMGKK383 pKa = 9.59SSYY386 pKa = 10.93AALLTVTDD394 pKa = 3.3VHH396 pKa = 6.14PVYY399 pKa = 9.79FTTKK403 pKa = 8.83PLRR406 pKa = 11.84RR407 pKa = 11.84PICGEE412 pKa = 3.47QWFEE416 pKa = 4.04AEE418 pKa = 4.39EE419 pKa = 4.45AEE421 pKa = 4.47EE422 pKa = 4.69DD423 pKa = 3.9PSVPSPTGYY432 pKa = 9.88QRR434 pKa = 11.84PSPDD438 pKa = 4.31DD439 pKa = 4.18LDD441 pKa = 4.24LLAEE445 pKa = 4.56FEE447 pKa = 4.36QQNLLNGAEE456 pKa = 4.43GQRR459 pKa = 11.84EE460 pKa = 4.08RR461 pKa = 11.84QGEE464 pKa = 4.21HH465 pKa = 5.34AHH467 pKa = 6.77GPNQNQTTSTQPPPHH482 pKa = 6.39QPSPHH487 pKa = 7.03DD488 pKa = 3.76AAQSGSSSEE497 pKa = 3.91ARR499 pKa = 11.84KK500 pKa = 8.01TEE502 pKa = 4.03SSDD505 pKa = 3.53EE506 pKa = 4.34PEE508 pKa = 4.38VSCKK512 pKa = 10.6DD513 pKa = 3.66EE514 pKa = 4.33EE515 pKa = 4.47DD516 pKa = 4.07LGSGTSDD523 pKa = 2.88GHH525 pKa = 4.97VTDD528 pKa = 4.4WSDD531 pKa = 4.19SEE533 pKa = 4.96SDD535 pKa = 4.23CSDD538 pKa = 4.03DD539 pKa = 4.12KK540 pKa = 11.34HH541 pKa = 7.81DD542 pKa = 5.02QIFDD546 pKa = 3.78SLSLFDD552 pKa = 4.38TADD555 pKa = 3.74LPDD558 pKa = 4.29LEE560 pKa = 4.69EE561 pKa = 4.58VEE563 pKa = 4.7EE564 pKa = 4.56EE565 pKa = 3.9PDD567 pKa = 3.77AAHH570 pKa = 5.95TTQTPTPDD578 pKa = 3.25VTDD581 pKa = 3.59EE582 pKa = 4.21SSAVQHH588 pKa = 5.8TQTPHH593 pKa = 5.83IAEE596 pKa = 4.43SLVDD600 pKa = 3.4SDD602 pKa = 4.31VFVGEE607 pKa = 4.56TIDD610 pKa = 6.56DD611 pKa = 3.75EE612 pKa = 4.67TQQPDD617 pKa = 3.9TVPAVQTRR625 pKa = 11.84EE626 pKa = 3.95NSRR629 pKa = 11.84STTVALEE636 pKa = 4.24PFDD639 pKa = 4.48EE640 pKa = 4.31EE641 pKa = 4.28TIEE644 pKa = 3.75ILKK647 pKa = 9.99IHH649 pKa = 6.84GFTNLKK655 pKa = 8.41PQHH658 pKa = 6.7DD659 pKa = 4.86GEE661 pKa = 4.3FQIAPVFYY669 pKa = 10.83NRR671 pKa = 11.84LAKK674 pKa = 10.21HH675 pKa = 5.41IPTYY679 pKa = 10.74EE680 pKa = 4.88GITTTTQSQFIAMAQALKK698 pKa = 10.37RR699 pKa = 11.84NCYY702 pKa = 9.71RR703 pKa = 11.84YY704 pKa = 10.6KK705 pKa = 10.77LDD707 pKa = 3.98AKK709 pKa = 10.41RR710 pKa = 11.84ATAFMSDD717 pKa = 3.27VKK719 pKa = 11.38NNLTGLVLPKK729 pKa = 10.11LDD731 pKa = 4.63RR732 pKa = 11.84DD733 pKa = 4.2LLTSWVALAEE743 pKa = 4.05NAKK746 pKa = 10.21RR747 pKa = 11.84SVGLIVIHH755 pKa = 6.3GAGGAGKK762 pKa = 10.07SRR764 pKa = 11.84ALQEE768 pKa = 4.13LLRR771 pKa = 11.84HH772 pKa = 5.7GKK774 pKa = 8.9MDD776 pKa = 3.46INEE779 pKa = 4.03VNIVVPTINLAVDD792 pKa = 4.23WKK794 pKa = 10.8RR795 pKa = 11.84KK796 pKa = 8.97LPSMDD801 pKa = 3.37PRR803 pKa = 11.84RR804 pKa = 11.84IMTFEE809 pKa = 4.01KK810 pKa = 10.17ACEE813 pKa = 4.0RR814 pKa = 11.84EE815 pKa = 4.35GKK817 pKa = 10.43SIVIMDD823 pKa = 5.07DD824 pKa = 3.38YY825 pKa = 11.82GKK827 pKa = 10.9LPAGYY832 pKa = 8.89IDD834 pKa = 5.1AYY836 pKa = 10.95LAIKK840 pKa = 10.13FNVEE844 pKa = 3.83LVILTGDD851 pKa = 3.18QRR853 pKa = 11.84QSVFHH858 pKa = 6.42NDD860 pKa = 2.92KK861 pKa = 10.46RR862 pKa = 11.84DD863 pKa = 3.58SQIALLNSNTDD874 pKa = 2.73HH875 pKa = 6.61YY876 pKa = 11.5KK877 pKa = 10.46RR878 pKa = 11.84YY879 pKa = 9.8CDD881 pKa = 3.63YY882 pKa = 11.08YY883 pKa = 11.51LNATHH888 pKa = 6.81RR889 pKa = 11.84QPRR892 pKa = 11.84RR893 pKa = 11.84LANPIKK899 pKa = 9.76VHH901 pKa = 6.47AEE903 pKa = 3.97RR904 pKa = 11.84EE905 pKa = 3.95VGGAVKK911 pKa = 10.02HH912 pKa = 5.55ATLIPTNAMTLVPAFRR928 pKa = 11.84SQSLLTDD935 pKa = 4.09LGRR938 pKa = 11.84QAMTYY943 pKa = 10.18AGCQGLTLPHH953 pKa = 6.63LSIVLDD959 pKa = 4.06KK960 pKa = 10.18DD961 pKa = 3.66TPLCSDD967 pKa = 3.5EE968 pKa = 4.38VLYY971 pKa = 9.62TALSRR976 pKa = 11.84ASEE979 pKa = 4.43TITFINTHH987 pKa = 5.35SNNKK991 pKa = 9.26EE992 pKa = 3.81FLDD995 pKa = 4.21KK996 pKa = 11.06LDD998 pKa = 3.52STPYY1002 pKa = 10.72LKK1004 pKa = 9.81TLISGVRR1011 pKa = 11.84EE1012 pKa = 3.87DD1013 pKa = 3.71EE1014 pKa = 4.18QAGRR1018 pKa = 11.84EE1019 pKa = 4.04QPPPEE1024 pKa = 4.38PSVRR1028 pKa = 11.84DD1029 pKa = 3.9SPTKK1033 pKa = 8.89THH1035 pKa = 6.62IPVANDD1041 pKa = 3.14SVQLEE1046 pKa = 4.34GKK1048 pKa = 9.66IEE1050 pKa = 3.96AMEE1053 pKa = 4.77DD1054 pKa = 3.08KK1055 pKa = 9.95DD1056 pKa = 4.96TRR1058 pKa = 11.84EE1059 pKa = 3.87LWSGEE1064 pKa = 3.84EE1065 pKa = 4.18KK1066 pKa = 10.4TNLMQTQDD1074 pKa = 3.55PVVQLFPHH1082 pKa = 5.46QQAKK1086 pKa = 10.89DD1087 pKa = 3.24EE1088 pKa = 4.47ALFKK1092 pKa = 10.13ITINEE1097 pKa = 4.64RR1098 pKa = 11.84IRR1100 pKa = 11.84LATPEE1105 pKa = 4.23TNRR1108 pKa = 11.84KK1109 pKa = 9.3ALTDD1113 pKa = 3.54TLNAGDD1119 pKa = 5.14LLFEE1123 pKa = 5.19AYY1125 pKa = 10.18ASFMNVPKK1133 pKa = 9.48EE1134 pKa = 3.95TQAFDD1139 pKa = 3.18KK1140 pKa = 10.82RR1141 pKa = 11.84LWAHH1145 pKa = 6.37CRR1147 pKa = 11.84QLALRR1152 pKa = 11.84TYY1154 pKa = 10.52LSKK1157 pKa = 9.7PTANLQQGAKK1167 pKa = 9.87RR1168 pKa = 11.84QDD1170 pKa = 3.13PDD1172 pKa = 3.57FPEE1175 pKa = 3.86NAIALFNKK1183 pKa = 8.34SQWVKK1188 pKa = 10.35KK1189 pKa = 10.15LEE1191 pKa = 4.14KK1192 pKa = 10.19VGCRR1196 pKa = 11.84FKK1198 pKa = 11.1AGQTISAFKK1207 pKa = 10.55QSTVLLTTTMALYY1220 pKa = 10.13LRR1222 pKa = 11.84KK1223 pKa = 9.51KK1224 pKa = 10.63RR1225 pKa = 11.84EE1226 pKa = 3.53GHH1228 pKa = 5.5QPDD1231 pKa = 3.85NVFIMCEE1238 pKa = 3.76KK1239 pKa = 10.26TPEE1242 pKa = 4.03QFNSFVLTKK1251 pKa = 10.0WDD1253 pKa = 3.81FTRR1256 pKa = 11.84PNYY1259 pKa = 9.75TSDD1262 pKa = 3.13YY1263 pKa = 8.03TQYY1266 pKa = 11.28DD1267 pKa = 3.62QSQDD1271 pKa = 3.09AAFLNFEE1278 pKa = 4.32LRR1280 pKa = 11.84KK1281 pKa = 9.62ARR1283 pKa = 11.84HH1284 pKa = 5.61FGVPEE1289 pKa = 3.95EE1290 pKa = 4.32VVDD1293 pKa = 5.57FYY1295 pKa = 12.14AFIKK1299 pKa = 8.86THH1301 pKa = 6.42AKK1303 pKa = 9.19TFLGNLAVMRR1313 pKa = 11.84LSGEE1317 pKa = 4.14GPTFDD1322 pKa = 6.1ANTEE1326 pKa = 4.05CNIAYY1331 pKa = 8.34DD1332 pKa = 3.78ALRR1335 pKa = 11.84FQLDD1339 pKa = 3.8STVKK1343 pKa = 10.2ACYY1346 pKa = 10.12AGDD1349 pKa = 3.68DD1350 pKa = 3.86LVRR1353 pKa = 11.84DD1354 pKa = 4.11KK1355 pKa = 11.59ACDD1358 pKa = 3.47EE1359 pKa = 4.26RR1360 pKa = 11.84PGWKK1364 pKa = 9.91YY1365 pKa = 11.05SEE1367 pKa = 4.37PLFSLKK1373 pKa = 10.54AKK1375 pKa = 10.13PLVTNKK1381 pKa = 9.9PDD1383 pKa = 3.19FCGWRR1388 pKa = 11.84LTKK1391 pKa = 10.71YY1392 pKa = 10.46GIVKK1396 pKa = 10.52SPVQLYY1402 pKa = 10.28QSLQLALRR1410 pKa = 11.84LGKK1413 pKa = 10.19VEE1415 pKa = 4.03EE1416 pKa = 4.42VKK1418 pKa = 10.49RR1419 pKa = 11.84SYY1421 pKa = 11.23AIDD1424 pKa = 3.38YY1425 pKa = 9.93LFAYY1429 pKa = 10.43RR1430 pKa = 11.84LGDD1433 pKa = 3.38QLYY1436 pKa = 10.56DD1437 pKa = 3.39IFDD1440 pKa = 3.76EE1441 pKa = 5.3DD1442 pKa = 4.39EE1443 pKa = 4.3LSKK1446 pKa = 10.91HH1447 pKa = 5.12QLVTRR1452 pKa = 11.84TLIKK1456 pKa = 10.51KK1457 pKa = 9.59GMQPPSSGEE1466 pKa = 3.8HH1467 pKa = 6.19LPTFHH1472 pKa = 6.1VTSDD1476 pKa = 3.02RR1477 pKa = 11.84LIRR1480 pKa = 11.84DD1481 pKa = 3.12PRR1483 pKa = 11.84AIKK1486 pKa = 10.66VSTFEE1491 pKa = 3.76SDD1493 pKa = 4.93RR1494 pKa = 11.84IILPLDD1500 pKa = 4.02IIDD1503 pKa = 4.01DD1504 pKa = 4.12HH1505 pKa = 6.66FSKK1508 pKa = 10.67SGKK1511 pKa = 6.98TDD1513 pKa = 3.25RR1514 pKa = 11.84AEE1516 pKa = 3.85MTEE1519 pKa = 3.91EE1520 pKa = 3.91SNRR1523 pKa = 11.84RR1524 pKa = 11.84AVEE1527 pKa = 3.67IGATTNVARR1536 pKa = 11.84QDD1538 pKa = 3.49PTLTDD1543 pKa = 4.15LFPDD1547 pKa = 3.81AFKK1550 pKa = 11.19

Molecular weight:
174.87 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|O55604|O55604_9VIRU 40kDa protein OS=Garlic virus C OX=12431 PE=4 SV=1
MM1 pKa = 7.54SFTPPPDD8 pKa = 3.43YY9 pKa = 11.33NKK11 pKa = 10.16VYY13 pKa = 9.42LTLAIGAAVGILVHH27 pKa = 5.69TLRR30 pKa = 11.84SNHH33 pKa = 5.54LTHH36 pKa = 7.43VGDD39 pKa = 4.01NTHH42 pKa = 6.72HH43 pKa = 6.66LPHH46 pKa = 7.02GGRR49 pKa = 11.84YY50 pKa = 9.26CDD52 pKa = 3.33GNKK55 pKa = 9.7RR56 pKa = 11.84IHH58 pKa = 6.65YY59 pKa = 7.95NGPQAGSTHH68 pKa = 5.71VSSVLPFFAAITLTLVIHH86 pKa = 6.94FISCRR91 pKa = 11.84RR92 pKa = 11.84RR93 pKa = 11.84RR94 pKa = 11.84VCIRR98 pKa = 11.84CSEE101 pKa = 4.07PHH103 pKa = 5.82

Molecular weight:
11.44 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2651

103

1550

441.8

49.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.431 ± 0.629

1.773 ± 0.547

5.885 ± 0.851

5.583 ± 0.87

3.923 ± 0.52

4.904 ± 0.458

3.621 ± 0.739

4.866 ± 0.49

4.904 ± 0.912

10.788 ± 1.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.584 ± 0.205

4.64 ± 1.149

5.998 ± 0.209

5.017 ± 0.632

5.545 ± 0.364

6.828 ± 0.567

8.186 ± 0.718

4.828 ± 0.443

0.717 ± 0.182

2.98 ± 0.361

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski