Listeria kieliensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2426 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3D8TJZ8|A0A3D8TJZ8_9LIST Aminoglycoside N(3)-acetyltransferase OS=Listeria kieliensis OX=1621700 GN=UR08_12530 PE=3 SV=1
MM1 pKa = 7.44AKK3 pKa = 10.4VMIVYY8 pKa = 10.7ASMTGNTQEE17 pKa = 4.07IADD20 pKa = 3.77ILGEE24 pKa = 4.09EE25 pKa = 4.34LEE27 pKa = 4.55KK28 pKa = 11.18YY29 pKa = 10.33DD30 pKa = 3.73IEE32 pKa = 4.81VEE34 pKa = 3.8IEE36 pKa = 3.71EE37 pKa = 5.03CINVEE42 pKa = 4.0PEE44 pKa = 3.69EE45 pKa = 4.0LLDD48 pKa = 4.11YY49 pKa = 11.22DD50 pKa = 3.8GALIGGYY57 pKa = 8.69TYY59 pKa = 11.29DD60 pKa = 5.36DD61 pKa = 3.82GQLPDD66 pKa = 4.05EE67 pKa = 4.84FVDD70 pKa = 5.19FYY72 pKa = 11.56EE73 pKa = 5.81DD74 pKa = 3.28MADD77 pKa = 3.08VDD79 pKa = 4.9FSGKK83 pKa = 9.41VCASFGSGDD92 pKa = 3.27TFYY95 pKa = 11.39DD96 pKa = 4.14EE97 pKa = 4.93FCLTVDD103 pKa = 4.72LVEE106 pKa = 4.33TRR108 pKa = 11.84LKK110 pKa = 10.77EE111 pKa = 3.88KK112 pKa = 10.63GATVPVEE119 pKa = 3.93GLKK122 pKa = 10.37VDD124 pKa = 5.0LDD126 pKa = 3.87PDD128 pKa = 3.69EE129 pKa = 5.32EE130 pKa = 4.28DD131 pKa = 3.51VEE133 pKa = 4.33RR134 pKa = 11.84AEE136 pKa = 5.24AYY138 pKa = 9.07AKK140 pKa = 10.49KK141 pKa = 10.58YY142 pKa = 11.06VDD144 pKa = 3.4VLLGNEE150 pKa = 3.97

Molecular weight: 16.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3D8TP97|A0A3D8TP97_9LIST MFS transporter OS=Listeria kieliensis OX=1621700 GN=UR08_06690 PE=4 SV=1
MM1 pKa = 7.87PKK3 pKa = 9.55MKK5 pKa = 8.8THH7 pKa = 6.93RR8 pKa = 11.84GSAKK12 pKa = 9.28RR13 pKa = 11.84FKK15 pKa = 10.13RR16 pKa = 11.84TGSGKK21 pKa = 10.12LKK23 pKa = 10.02RR24 pKa = 11.84RR25 pKa = 11.84HH26 pKa = 5.89AFVSHH31 pKa = 5.87MFANKK36 pKa = 9.68SKK38 pKa = 9.57KK39 pKa = 8.58QKK41 pKa = 10.18RR42 pKa = 11.84KK43 pKa = 8.88LRR45 pKa = 11.84KK46 pKa = 9.04AAMVSAGDD54 pKa = 3.9FKK56 pKa = 11.14RR57 pKa = 11.84IRR59 pKa = 11.84QMVAKK64 pKa = 9.76MKK66 pKa = 10.66

Molecular weight: 7.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2426

0

2426

732639

37

2189

302.0

33.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.782 ± 0.05

0.6 ± 0.013

5.149 ± 0.044

7.667 ± 0.058

4.873 ± 0.043

6.826 ± 0.041

1.846 ± 0.023

7.352 ± 0.049

7.134 ± 0.047

10.08 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.616 ± 0.022

4.096 ± 0.032

3.476 ± 0.027

3.63 ± 0.028

4.187 ± 0.038

5.916 ± 0.038

5.456 ± 0.04

7.042 ± 0.037

0.879 ± 0.016

3.394 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski