Flavobacterium croceum DSM 17960

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; Flavobacterium croceum

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2701 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S4N9F2|A0A2S4N9F2_9FLAO Arabinose-5-phosphate isomerase OS=Flavobacterium croceum DSM 17960 OX=1121886 GN=Q361_10424 PE=3 SV=1
MM1 pKa = 7.57KK2 pKa = 10.43KK3 pKa = 10.44LYY5 pKa = 10.47LQILLFFIGLATTVAQVPNYY25 pKa = 9.31NVVSIPYY32 pKa = 9.1QNVVLSPTMASTTISFNLDD51 pKa = 3.14DD52 pKa = 4.76TYY54 pKa = 11.39SGPIALPFNINFYY67 pKa = 11.05GVTNNFMNVSSNGYY81 pKa = 7.95ITFNSNAAGSNSPWSFNTTIPNAGFPVKK109 pKa = 10.41NAFLGCYY116 pKa = 9.53HH117 pKa = 7.79DD118 pKa = 4.3INNAIVNTTDD128 pKa = 3.38PQSVVYY134 pKa = 10.12SIQGYY139 pKa = 9.47APFRR143 pKa = 11.84KK144 pKa = 10.18VIVLYY149 pKa = 10.99SNNPQFSCNNSAISTFAMIMYY170 pKa = 10.14EE171 pKa = 4.17DD172 pKa = 4.35GEE174 pKa = 4.39KK175 pKa = 10.44FDD177 pKa = 3.92VQIKK181 pKa = 10.56RR182 pKa = 11.84KK183 pKa = 9.65DD184 pKa = 3.41LCATWNGGRR193 pKa = 11.84AVVGLIDD200 pKa = 3.71PTGASAIAAPGRR212 pKa = 11.84NTSAWTANYY221 pKa = 7.53EE222 pKa = 3.53AWRR225 pKa = 11.84FYY227 pKa = 10.6NTFGANHH234 pKa = 5.8YY235 pKa = 9.9KK236 pKa = 10.12FWKK239 pKa = 10.38CEE241 pKa = 3.7TDD243 pKa = 3.48GDD245 pKa = 4.1GLEE248 pKa = 4.35PFNLAVVKK256 pKa = 10.06TDD258 pKa = 3.61LNEE261 pKa = 4.11PSMTFYY267 pKa = 11.04SGIINGQVDD276 pKa = 4.42VNTALPEE283 pKa = 4.63LYY285 pKa = 10.65QNTTAFNQKK294 pKa = 9.62IYY296 pKa = 10.48GLKK299 pKa = 8.58STGEE303 pKa = 3.92IVTIDD308 pKa = 3.94LKK310 pKa = 11.47VFSCDD315 pKa = 3.53NDD317 pKa = 3.37YY318 pKa = 11.79DD319 pKa = 4.54LDD321 pKa = 3.99NVTTSLEE328 pKa = 4.02DD329 pKa = 3.86LNNDD333 pKa = 3.34TNLANDD339 pKa = 4.01DD340 pKa = 3.77TDD342 pKa = 5.62ADD344 pKa = 4.0GTPNFIDD351 pKa = 4.09NDD353 pKa = 4.04DD354 pKa = 4.81DD355 pKa = 5.72GDD357 pKa = 4.9LILTSIEE364 pKa = 4.06YY365 pKa = 10.55VFNSNKK371 pKa = 8.06NTNATSTTNSVLDD384 pKa = 3.98TDD386 pKa = 4.19NDD388 pKa = 4.87GIPNYY393 pKa = 10.35LDD395 pKa = 4.14NDD397 pKa = 4.19DD398 pKa = 5.75DD399 pKa = 5.99GDD401 pKa = 4.24GVLTMNEE408 pKa = 4.31DD409 pKa = 3.79YY410 pKa = 11.21NGNRR414 pKa = 11.84NPADD418 pKa = 4.5DD419 pKa = 4.24DD420 pKa = 4.38TNGNSIPDD428 pKa = 3.7YY429 pKa = 11.02LEE431 pKa = 3.84TSVALGTAQNILDD444 pKa = 4.26SYY446 pKa = 9.05FTVYY450 pKa = 10.42PNPANDD456 pKa = 3.42VLFIKK461 pKa = 10.72NNNFNNADD469 pKa = 3.33IKK471 pKa = 11.09VKK473 pKa = 10.14IVSVTGAVVKK483 pKa = 10.52EE484 pKa = 3.92MSTQNEE490 pKa = 3.96ITPISVSALQSGMYY504 pKa = 9.2IVEE507 pKa = 5.08AISSEE512 pKa = 3.74GTSYY516 pKa = 11.29HH517 pKa = 6.81KK518 pKa = 10.45FIKK521 pKa = 10.27KK522 pKa = 9.85

Molecular weight: 57.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S4N809|A0A2S4N809_9FLAO Phosphoribosyl pyrophosphate synthase OS=Flavobacterium croceum DSM 17960 OX=1121886 GN=Q361_10721 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.53HH17 pKa = 4.24GFMEE21 pKa = 5.09RR22 pKa = 11.84MATANGRR29 pKa = 11.84KK30 pKa = 8.93VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.21GRR40 pKa = 11.84HH41 pKa = 5.23KK42 pKa = 10.67LSVSSEE48 pKa = 3.91PRR50 pKa = 11.84HH51 pKa = 5.92KK52 pKa = 10.61KK53 pKa = 9.84

Molecular weight: 6.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2701

0

2701

889783

28

2406

329.4

37.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.067 ± 0.054

0.86 ± 0.015

4.966 ± 0.038

6.247 ± 0.057

5.359 ± 0.038

5.822 ± 0.045

1.753 ± 0.024

8.215 ± 0.048

8.383 ± 0.065

9.079 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.115 ± 0.027

6.841 ± 0.062

3.281 ± 0.026

3.773 ± 0.031

2.859 ± 0.036

6.469 ± 0.048

6.34 ± 0.076

6.151 ± 0.038

0.984 ± 0.015

4.434 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski