European elk papillomavirus (EEPV)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus

Average proteome isoelectric point is 7.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P11331|VE6_PAPVE Protein E6 OS=European elk papillomavirus OX=10565 GN=E6 PE=3 SV=1
MM1 pKa = 7.77TYY3 pKa = 11.23GLLLFLGLTFGLQLMLLVFLLFFFLVWWDD32 pKa = 3.56QFGCRR37 pKa = 11.84CEE39 pKa = 4.24NMQLL43 pKa = 3.46

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q84259|Q84259_PAPVE Uncharacterized protein E4 (Fragment) OS=European elk papillomavirus OX=10565 GN=E4 PE=4 SV=1
MM1 pKa = 7.4GCYY4 pKa = 9.55HH5 pKa = 7.28PLIIVSFITLKK16 pKa = 10.55DD17 pKa = 3.05ACYY20 pKa = 10.21LPKK23 pKa = 10.48TRR25 pKa = 11.84DD26 pKa = 3.61VQSLEE31 pKa = 3.85QLVHH35 pKa = 6.44HH36 pKa = 7.07GGHH39 pKa = 5.49VAVTSRR45 pKa = 11.84LVNGFQMSLPRR56 pKa = 11.84PTATSRR62 pKa = 11.84LYY64 pKa = 9.06LTPGFRR70 pKa = 11.84RR71 pKa = 11.84TINFMITRR79 pKa = 11.84CSHH82 pKa = 5.79GVSPTCVKK90 pKa = 10.53KK91 pKa = 10.22PSPNHH96 pKa = 6.91RR97 pKa = 11.84ISLWRR102 pKa = 11.84RR103 pKa = 11.84DD104 pKa = 3.51SDD106 pKa = 3.64SGKK109 pKa = 9.62PRR111 pKa = 11.84TKK113 pKa = 10.79LLDD116 pKa = 3.52LL117 pKa = 4.89

Molecular weight: 13.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15

0

15

2914

24

611

194.3

21.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.589 ± 0.655

2.78 ± 0.641

4.633 ± 0.635

5.319 ± 0.506

3.844 ± 0.417

7.344 ± 0.734

2.814 ± 0.453

4.049 ± 0.537

5.045 ± 0.679

9.369 ± 0.924

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.922 ± 0.402

2.917 ± 0.504

7.104 ± 0.781

3.912 ± 0.297

7.241 ± 0.896

7.756 ± 0.616

6.658 ± 0.412

6.143 ± 0.346

1.613 ± 0.334

2.951 ± 0.272
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski