Vibrio phage VEN

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Colwellvirinae; Trungvirus; Vibrio virus VEN

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H5BN07|A0A2H5BN07_9CAUD DNA packaging protein OS=Vibrio phage VEN OX=2059879 PE=4 SV=1
MM1 pKa = 7.61RR2 pKa = 11.84VMSFEE7 pKa = 4.9DD8 pKa = 3.44WLDD11 pKa = 3.41MYY13 pKa = 11.4GDD15 pKa = 4.69DD16 pKa = 4.21VPSGIDD22 pKa = 3.27LYY24 pKa = 10.82EE25 pKa = 5.78AYY27 pKa = 10.46DD28 pKa = 3.85SFVDD32 pKa = 3.56SHH34 pKa = 8.12KK35 pKa = 10.55EE36 pKa = 3.89QQLEE40 pKa = 4.11TALLNDD46 pKa = 3.79

Molecular weight: 5.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H5BMY6|A0A2H5BMY6_9CAUD Uncharacterized protein OS=Vibrio phage VEN OX=2059879 PE=4 SV=1
MM1 pKa = 7.85AIYY4 pKa = 10.38SCGDD8 pKa = 2.77ISTPSQSNEE17 pKa = 3.35YY18 pKa = 9.2RR19 pKa = 11.84KK20 pKa = 10.82AMLARR25 pKa = 11.84QARR28 pKa = 11.84EE29 pKa = 3.8RR30 pKa = 11.84HH31 pKa = 4.98GKK33 pKa = 8.99AAAFQLSNMHH43 pKa = 6.05HH44 pKa = 5.64TKK46 pKa = 10.61KK47 pKa = 10.91GDD49 pKa = 3.63FTHH52 pKa = 7.16LAPVGHH58 pKa = 7.23LRR60 pKa = 11.84TVIRR64 pKa = 11.84GG65 pKa = 3.38

Molecular weight: 7.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

13660

41

1248

248.4

27.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.053 ± 0.482

1.018 ± 0.146

6.325 ± 0.201

7.255 ± 0.335

3.792 ± 0.208

7.306 ± 0.331

2.196 ± 0.218

5.337 ± 0.228

6.801 ± 0.353

8.272 ± 0.204

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.936 ± 0.17

4.693 ± 0.217

3.455 ± 0.226

4.012 ± 0.28

4.824 ± 0.239

6.186 ± 0.327

6.003 ± 0.316

6.589 ± 0.308

1.384 ± 0.147

3.565 ± 0.17
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski