Parasedimentitalea marina

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Parasedimentitalea

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4642 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3T0N3V4|A0A3T0N3V4_9RHOB MerR family transcriptional regulator OS=Parasedimentitalea marina OX=2483033 GN=EBB79_12775 PE=4 SV=1
MM1 pKa = 7.07ATYY4 pKa = 10.28VPHH7 pKa = 6.96ASYY10 pKa = 11.07RR11 pKa = 11.84LYY13 pKa = 11.18DD14 pKa = 3.36FAGRR18 pKa = 11.84LFAAEE23 pKa = 4.25EE24 pKa = 4.28VEE26 pKa = 4.41ITQTSNGVDD35 pKa = 3.12IQFLGFDD42 pKa = 3.32RR43 pKa = 11.84RR44 pKa = 11.84TGEE47 pKa = 4.17VKK49 pKa = 10.73VKK51 pKa = 10.8GGMRR55 pKa = 11.84LSGDD59 pKa = 3.38NLVVDD64 pKa = 3.81NGEE67 pKa = 4.16IVSGSIGTVQFFAFEE82 pKa = 3.89FEE84 pKa = 4.72YY85 pKa = 11.0YY86 pKa = 10.46AGRR89 pKa = 11.84LEE91 pKa = 4.01SLNWDD96 pKa = 3.33GTYY99 pKa = 10.55LQNFLSEE106 pKa = 4.34TTDD109 pKa = 3.45GNFSPFYY116 pKa = 10.38DD117 pKa = 3.86ALTGAVDD124 pKa = 3.99LVRR127 pKa = 11.84GISSDD132 pKa = 3.71DD133 pKa = 3.95NYY135 pKa = 11.75DD136 pKa = 3.1HH137 pKa = 7.45SEE139 pKa = 4.41YY140 pKa = 11.32YY141 pKa = 10.54DD142 pKa = 3.3ATDD145 pKa = 2.83IHH147 pKa = 7.79LGAGNDD153 pKa = 3.96SYY155 pKa = 10.72THH157 pKa = 6.45PRR159 pKa = 11.84LTEE162 pKa = 3.84MSPLIIDD169 pKa = 3.83GGEE172 pKa = 3.93GHH174 pKa = 7.62DD175 pKa = 4.09NFQAGIFGSYY185 pKa = 10.11EE186 pKa = 3.67PLLIDD191 pKa = 3.26VAKK194 pKa = 10.8NLFVDD199 pKa = 4.73EE200 pKa = 4.72YY201 pKa = 10.83GVEE204 pKa = 3.9HH205 pKa = 6.11VVRR208 pKa = 11.84NFEE211 pKa = 4.15FFQGGRR217 pKa = 11.84GNDD220 pKa = 3.7TLIGAMDD227 pKa = 4.88RR228 pKa = 11.84PNQFYY233 pKa = 10.32GYY235 pKa = 9.5QGSDD239 pKa = 3.36HH240 pKa = 6.97ISGGNHH246 pKa = 7.23DD247 pKa = 5.54DD248 pKa = 3.8YY249 pKa = 11.72LAGGSGLDD257 pKa = 3.48TILAYY262 pKa = 10.42GGDD265 pKa = 4.27DD266 pKa = 4.0YY267 pKa = 11.7ILGSSHH273 pKa = 7.67DD274 pKa = 4.18YY275 pKa = 11.34VDD277 pKa = 4.16GGDD280 pKa = 4.27GIDD283 pKa = 3.28TFGYY287 pKa = 10.24RR288 pKa = 11.84LIAGYY293 pKa = 10.51VYY295 pKa = 10.36IDD297 pKa = 5.36LEE299 pKa = 4.18NQEE302 pKa = 4.92DD303 pKa = 3.84NRR305 pKa = 11.84GDD307 pKa = 3.79AIYY310 pKa = 9.49TVLVNIEE317 pKa = 4.17NLNGSNYY324 pKa = 9.03YY325 pKa = 10.98DD326 pKa = 4.36VMLGDD331 pKa = 4.59ANDD334 pKa = 3.71NVIEE338 pKa = 4.29TFGYY342 pKa = 10.41RR343 pKa = 11.84DD344 pKa = 3.44ILHH347 pKa = 6.67GRR349 pKa = 11.84DD350 pKa = 3.83GNDD353 pKa = 3.13TLDD356 pKa = 3.76AGEE359 pKa = 4.96GNDD362 pKa = 4.49DD363 pKa = 3.83LSGGTGANLLIGGAGADD380 pKa = 3.24NFIFEE385 pKa = 4.64TQNATDD391 pKa = 4.44TIADD395 pKa = 3.86FEE397 pKa = 4.69VGIDD401 pKa = 3.66SLDD404 pKa = 3.74FSALTSQADD413 pKa = 4.31FINFEE418 pKa = 4.81LNGMSYY424 pKa = 11.01SRR426 pKa = 11.84ISCFGDD432 pKa = 3.78FKK434 pKa = 11.09LGNVSLRR441 pKa = 11.84FVQSQEE447 pKa = 3.85DD448 pKa = 3.84VEE450 pKa = 5.07IYY452 pKa = 10.7LDD454 pKa = 3.78PSLGGEE460 pKa = 4.27SASPLITLIDD470 pKa = 3.6IGIHH474 pKa = 6.19DD475 pKa = 6.15LIVDD479 pKa = 3.84DD480 pKa = 6.89FIFF483 pKa = 4.49

Molecular weight: 52.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3T0MYF2|A0A3T0MYF2_9RHOB Uncharacterized protein OS=Parasedimentitalea marina OX=2483033 GN=EBB79_02025 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AHH37 pKa = 5.39GRR39 pKa = 11.84KK40 pKa = 8.9EE41 pKa = 3.73LSAA44 pKa = 4.94

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4642

0

4642

1420733

26

2158

306.1

33.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.253 ± 0.045

0.97 ± 0.012

6.054 ± 0.029

5.55 ± 0.037

3.842 ± 0.024

8.375 ± 0.035

2.115 ± 0.017

5.43 ± 0.023

3.504 ± 0.032

10.14 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.854 ± 0.016

3.007 ± 0.019

4.822 ± 0.028

3.719 ± 0.021

5.949 ± 0.032

5.893 ± 0.032

5.631 ± 0.025

7.182 ± 0.027

1.389 ± 0.015

2.321 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski