Serratia phage Moabite

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Moabitevirus; Serratia virus Moabite

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 338 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y5TQL5|A0A4Y5TQL5_9CAUD Uncharacterized protein OS=Serratia phage Moabite OX=2587814 GN=CPT_Moabite_243 PE=4 SV=1
MM1 pKa = 7.18YY2 pKa = 10.14IKK4 pKa = 10.59GFFPITVNDD13 pKa = 4.09DD14 pKa = 3.27KK15 pKa = 11.93GDD17 pKa = 4.04VIKK20 pKa = 9.93LTYY23 pKa = 10.61DD24 pKa = 3.34EE25 pKa = 5.01AVCDD29 pKa = 4.76IISADD34 pKa = 3.68PLGEE38 pKa = 4.98DD39 pKa = 4.57IYY41 pKa = 11.38ATLCIYY47 pKa = 11.04SDD49 pKa = 3.8VTRR52 pKa = 11.84EE53 pKa = 3.91TPVFNFTATVSAAGVTDD70 pKa = 3.57QNIAEE75 pKa = 4.18LKK77 pKa = 10.35IFEE80 pKa = 4.13EE81 pKa = 5.12AINNVCHH88 pKa = 6.48GFTYY92 pKa = 10.9VKK94 pKa = 10.63DD95 pKa = 3.52

Molecular weight: 10.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y5TPH3|A0A4Y5TPH3_9CAUD Uncharacterized protein OS=Serratia phage Moabite OX=2587814 GN=CPT_Moabite_238 PE=4 SV=1
MM1 pKa = 7.7KK2 pKa = 9.95PGNLGKK8 pKa = 8.7TPVTGTHH15 pKa = 6.78GYY17 pKa = 9.87VVDD20 pKa = 3.85SSFYY24 pKa = 10.33PSNQPCVRR32 pKa = 11.84RR33 pKa = 11.84KK34 pKa = 8.07VTMKK38 pKa = 10.13RR39 pKa = 11.84SRR41 pKa = 11.84VATAVGMEE49 pKa = 3.8VWVFGRR55 pKa = 11.84GIQQ58 pKa = 3.75

Molecular weight: 6.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

338

0

338

85942

30

2213

254.3

28.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.052 ± 0.158

0.918 ± 0.053

6.333 ± 0.094

6.362 ± 0.176

4.355 ± 0.087

6.684 ± 0.185

1.634 ± 0.065

6.445 ± 0.111

5.905 ± 0.114

8.275 ± 0.119

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.69 ± 0.071

5.479 ± 0.119

4.024 ± 0.081

3.065 ± 0.093

5.443 ± 0.12

6.543 ± 0.099

6.294 ± 0.099

7.226 ± 0.121

1.283 ± 0.054

3.989 ± 0.095
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski