Amino acid dipepetide frequency for Pseudogymnoascus destructans (strain ATCC MYA-4855 / 20631-21) (Bat white-nose syndrome fungus) (Geomyces destructans)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.226AlaAla: 10.226 ± 0.076
0.939AlaCys: 0.939 ± 0.017
4.402AlaAsp: 4.402 ± 0.037
5.731AlaGlu: 5.731 ± 0.049
3.005AlaPhe: 3.005 ± 0.029
6.09AlaGly: 6.09 ± 0.05
1.762AlaHis: 1.762 ± 0.022
4.231AlaIle: 4.231 ± 0.033
4.609AlaLys: 4.609 ± 0.042
7.766AlaLeu: 7.766 ± 0.052
2.004AlaMet: 2.004 ± 0.021
3.004AlaAsn: 3.004 ± 0.029
5.599AlaPro: 5.599 ± 0.058
3.557AlaGln: 3.557 ± 0.034
5.212AlaArg: 5.212 ± 0.04
7.291AlaSer: 7.291 ± 0.047
5.624AlaThr: 5.624 ± 0.044
5.47AlaVal: 5.47 ± 0.044
1.053AlaTrp: 1.053 ± 0.018
2.093AlaTyr: 2.093 ± 0.025
0.0AlaXaa: 0.0 ± 0.0
Cys
0.889CysAla: 0.889 ± 0.015
0.228CysCys: 0.228 ± 0.008
0.577CysAsp: 0.577 ± 0.014
0.571CysGlu: 0.571 ± 0.012
0.485CysPhe: 0.485 ± 0.012
0.901CysGly: 0.901 ± 0.015
0.296CysHis: 0.296 ± 0.009
0.615CysIle: 0.615 ± 0.014
0.506CysLys: 0.506 ± 0.014
1.121CysLeu: 1.121 ± 0.02
0.263CysMet: 0.263 ± 0.009
0.394CysAsn: 0.394 ± 0.011
0.614CysPro: 0.614 ± 0.017
0.379CysGln: 0.379 ± 0.01
0.683CysArg: 0.683 ± 0.013
0.796CysSer: 0.796 ± 0.013
0.637CysThr: 0.637 ± 0.013
0.732CysVal: 0.732 ± 0.016
0.17CysTrp: 0.17 ± 0.007
0.314CysTyr: 0.314 ± 0.01
0.0CysXaa: 0.0 ± 0.0
Asp
4.902AspAla: 4.902 ± 0.037
0.561AspCys: 0.561 ± 0.013
4.33AspAsp: 4.33 ± 0.048
4.778AspGlu: 4.778 ± 0.046
2.113AspPhe: 2.113 ± 0.021
4.132AspGly: 4.132 ± 0.035
1.101AspHis: 1.101 ± 0.015
3.044AspIle: 3.044 ± 0.031
2.528AspLys: 2.528 ± 0.032
4.857AspLeu: 4.857 ± 0.038
1.263AspMet: 1.263 ± 0.022
1.925AspAsn: 1.925 ± 0.024
3.058AspPro: 3.058 ± 0.031
1.744AspGln: 1.744 ± 0.025
2.982AspArg: 2.982 ± 0.034
4.04AspSer: 4.04 ± 0.037
2.95AspThr: 2.95 ± 0.032
3.596AspVal: 3.596 ± 0.029
0.774AspTrp: 0.774 ± 0.015
1.523AspTyr: 1.523 ± 0.021
0.0AspXaa: 0.0 ± 0.0
Glu
6.092GluAla: 6.092 ± 0.057
0.592GluCys: 0.592 ± 0.012
4.499GluAsp: 4.499 ± 0.048
6.347GluGlu: 6.347 ± 0.074
1.989GluPhe: 1.989 ± 0.022
4.565GluGly: 4.565 ± 0.039
1.289GluHis: 1.289 ± 0.017
3.047GluIle: 3.047 ± 0.031
3.972GluLys: 3.972 ± 0.047
5.296GluLeu: 5.296 ± 0.039
1.622GluMet: 1.622 ± 0.02
2.213GluAsn: 2.213 ± 0.027
2.796GluPro: 2.796 ± 0.039
2.418GluGln: 2.418 ± 0.029
4.328GluArg: 4.328 ± 0.039
4.371GluSer: 4.371 ± 0.039
3.43GluThr: 3.43 ± 0.032
4.043GluVal: 4.043 ± 0.039
0.878GluTrp: 0.878 ± 0.016
1.676GluTyr: 1.676 ± 0.019
0.0GluXaa: 0.0 ± 0.0
Phe
2.932PheAla: 2.932 ± 0.032
0.491PheCys: 0.491 ± 0.011
2.174PheAsp: 2.174 ± 0.026
2.163PheGlu: 2.163 ± 0.023
1.401PhePhe: 1.401 ± 0.025
2.748PheGly: 2.748 ± 0.029
0.811PheHis: 0.811 ± 0.015
1.674PheIle: 1.674 ± 0.026
1.576PheLys: 1.576 ± 0.019
3.177PheLeu: 3.177 ± 0.033
0.771PheMet: 0.771 ± 0.015
1.359PheAsn: 1.359 ± 0.02
1.794PhePro: 1.794 ± 0.022
1.321PheGln: 1.321 ± 0.02
1.874PheArg: 1.874 ± 0.023
2.761PheSer: 2.761 ± 0.029
2.018PheThr: 2.018 ± 0.023
2.239PheVal: 2.239 ± 0.028
0.55PheTrp: 0.55 ± 0.013
0.967PheTyr: 0.967 ± 0.016
0.0PheXaa: 0.0 ± 0.0
Gly
5.755GlyAla: 5.755 ± 0.047
0.808GlyCys: 0.808 ± 0.016
3.8GlyAsp: 3.8 ± 0.032
4.369GlyGlu: 4.369 ± 0.031
2.72GlyPhe: 2.72 ± 0.033
7.069GlyGly: 7.069 ± 0.084
1.651GlyHis: 1.651 ± 0.022
3.401GlyIle: 3.401 ± 0.034
3.909GlyLys: 3.909 ± 0.035
5.918GlyLeu: 5.918 ± 0.046
1.76GlyMet: 1.76 ± 0.025
2.546GlyAsn: 2.546 ± 0.031
3.3GlyPro: 3.3 ± 0.033
2.598GlyGln: 2.598 ± 0.032
4.52GlyArg: 4.52 ± 0.044
5.691GlySer: 5.691 ± 0.047
3.846GlyThr: 3.846 ± 0.036
4.603GlyVal: 4.603 ± 0.039
1.136GlyTrp: 1.136 ± 0.019
2.013GlyTyr: 2.013 ± 0.028
0.0GlyXaa: 0.0 ± 0.0
His
1.783HisAla: 1.783 ± 0.021
0.289HisCys: 0.289 ± 0.009
1.197HisAsp: 1.197 ± 0.019
1.215HisGlu: 1.215 ± 0.019
0.851HisPhe: 0.851 ± 0.014
1.633HisGly: 1.633 ± 0.022
0.789HisHis: 0.789 ± 0.017
1.194HisIle: 1.194 ± 0.018
0.962HisLys: 0.962 ± 0.018
2.129HisLeu: 2.129 ± 0.023
0.471HisMet: 0.471 ± 0.012
0.842HisAsn: 0.842 ± 0.015
1.613HisPro: 1.613 ± 0.024
0.97HisGln: 0.97 ± 0.017
1.459HisArg: 1.459 ± 0.021
1.703HisSer: 1.703 ± 0.023
1.284HisThr: 1.284 ± 0.018
1.322HisVal: 1.322 ± 0.02
0.282HisTrp: 0.282 ± 0.008
0.658HisTyr: 0.658 ± 0.014
0.0HisXaa: 0.0 ± 0.0
Ile
4.146IleAla: 4.146 ± 0.032
0.681IleCys: 0.681 ± 0.016
2.848IleAsp: 2.848 ± 0.028
2.984IleGlu: 2.984 ± 0.03
1.842IlePhe: 1.842 ± 0.02
3.033IleGly: 3.033 ± 0.034
1.115IleHis: 1.115 ± 0.018
2.451IleIle: 2.451 ± 0.029
2.314IleLys: 2.314 ± 0.028
4.341IleLeu: 4.341 ± 0.034
1.03IleMet: 1.03 ± 0.016
1.765IleAsn: 1.765 ± 0.024
3.006IlePro: 3.006 ± 0.03
1.856IleGln: 1.856 ± 0.022
2.764IleArg: 2.764 ± 0.025
3.854IleSer: 3.854 ± 0.032
2.868IleThr: 2.868 ± 0.028
2.988IleVal: 2.988 ± 0.027
0.631IleTrp: 0.631 ± 0.014
1.329IleTyr: 1.329 ± 0.02
0.0IleXaa: 0.0 ± 0.0
Lys
4.814LysAla: 4.814 ± 0.042
0.53LysCys: 0.53 ± 0.014
2.903LysAsp: 2.903 ± 0.036
3.808LysGlu: 3.808 ± 0.049
1.511LysPhe: 1.511 ± 0.019
3.394LysGly: 3.394 ± 0.032
1.116LysHis: 1.116 ± 0.017
2.36LysIle: 2.36 ± 0.024
3.763LysLys: 3.763 ± 0.06
4.3LysLeu: 4.3 ± 0.032
1.116LysMet: 1.116 ± 0.016
1.834LysAsn: 1.834 ± 0.024
2.919LysPro: 2.919 ± 0.035
1.852LysGln: 1.852 ± 0.025
3.692LysArg: 3.692 ± 0.042
3.795LysSer: 3.795 ± 0.031
2.944LysThr: 2.944 ± 0.026
3.039LysVal: 3.039 ± 0.031
0.678LysTrp: 0.678 ± 0.013
1.385LysTyr: 1.385 ± 0.021
0.0LysXaa: 0.0 ± 0.0
Leu
7.726LeuAla: 7.726 ± 0.048
1.077LeuCys: 1.077 ± 0.018
4.91LeuAsp: 4.91 ± 0.035
5.503LeuGlu: 5.503 ± 0.047
3.016LeuPhe: 3.016 ± 0.032
5.844LeuGly: 5.844 ± 0.042
2.094LeuHis: 2.094 ± 0.028
3.763LeuIle: 3.763 ± 0.034
4.46LeuLys: 4.46 ± 0.039
8.056LeuLeu: 8.056 ± 0.064
1.745LeuMet: 1.745 ± 0.021
3.035LeuAsn: 3.035 ± 0.028
5.555LeuPro: 5.555 ± 0.038
3.648LeuGln: 3.648 ± 0.039
5.743LeuArg: 5.743 ± 0.042
7.096LeuSer: 7.096 ± 0.048
4.789LeuThr: 4.789 ± 0.037
5.098LeuVal: 5.098 ± 0.04
1.09LeuTrp: 1.09 ± 0.018
2.184LeuTyr: 2.184 ± 0.027
0.0LeuXaa: 0.0 ± 0.0
Met
2.3MetAla: 2.3 ± 0.027
0.227MetCys: 0.227 ± 0.007
1.308MetAsp: 1.308 ± 0.018
1.416MetGlu: 1.416 ± 0.019
0.708MetPhe: 0.708 ± 0.012
1.64MetGly: 1.64 ± 0.022
0.473MetHis: 0.473 ± 0.012
0.931MetIle: 0.931 ± 0.015
1.106MetLys: 1.106 ± 0.018
1.825MetLeu: 1.825 ± 0.023
0.643MetMet: 0.643 ± 0.012
0.785MetAsn: 0.785 ± 0.013
1.302MetPro: 1.302 ± 0.021
0.848MetGln: 0.848 ± 0.017
1.34MetArg: 1.34 ± 0.021
1.895MetSer: 1.895 ± 0.024
1.269MetThr: 1.269 ± 0.017
1.363MetVal: 1.363 ± 0.02
0.262MetTrp: 0.262 ± 0.008
0.496MetTyr: 0.496 ± 0.011
0.0MetXaa: 0.0 ± 0.0
Asn
3.102AsnAla: 3.102 ± 0.032
0.429AsnCys: 0.429 ± 0.012
1.95AsnAsp: 1.95 ± 0.023
2.081AsnGlu: 2.081 ± 0.026
1.333AsnPhe: 1.333 ± 0.021
2.963AsnGly: 2.963 ± 0.03
0.828AsnHis: 0.828 ± 0.015
2.022AsnIle: 2.022 ± 0.022
1.646AsnLys: 1.646 ± 0.025
3.129AsnLeu: 3.129 ± 0.033
0.853AsnMet: 0.853 ± 0.015
1.502AsnAsn: 1.502 ± 0.026
2.39AsnPro: 2.39 ± 0.025
1.303AsnGln: 1.303 ± 0.023
1.987AsnArg: 1.987 ± 0.021
2.751AsnSer: 2.751 ± 0.028
2.18AsnThr: 2.18 ± 0.024
2.15AsnVal: 2.15 ± 0.023
0.493AsnTrp: 0.493 ± 0.013
1.002AsnTyr: 1.002 ± 0.015
0.0AsnXaa: 0.0 ± 0.0
Pro
5.674ProAla: 5.674 ± 0.059
0.463ProCys: 0.463 ± 0.012
2.93ProAsp: 2.93 ± 0.028
3.705ProGlu: 3.705 ± 0.036
1.911ProPhe: 1.911 ± 0.023
3.829ProGly: 3.829 ± 0.037
1.355ProHis: 1.355 ± 0.023
2.64ProIle: 2.64 ± 0.026
2.925ProLys: 2.925 ± 0.029
4.811ProLeu: 4.811 ± 0.041
1.069ProMet: 1.069 ± 0.017
2.173ProAsn: 2.173 ± 0.026
5.728ProPro: 5.728 ± 0.08
2.584ProGln: 2.584 ± 0.037
3.618ProArg: 3.618 ± 0.037
6.101ProSer: 6.101 ± 0.054
4.48ProThr: 4.48 ± 0.043
3.589ProVal: 3.589 ± 0.04
0.652ProTrp: 0.652 ± 0.011
1.446ProTyr: 1.446 ± 0.022
0.0ProXaa: 0.0 ± 0.0
Gln
3.414GlnAla: 3.414 ± 0.035
0.388GlnCys: 0.388 ± 0.012
1.957GlnAsp: 1.957 ± 0.024
2.43GlnGlu: 2.43 ± 0.03
1.232GlnPhe: 1.232 ± 0.021
2.536GlnGly: 2.536 ± 0.03
1.028GlnHis: 1.028 ± 0.021
1.812GlnIle: 1.812 ± 0.021
2.068GlnLys: 2.068 ± 0.029
3.357GlnLeu: 3.357 ± 0.03
0.892GlnMet: 0.892 ± 0.016
1.512GlnAsn: 1.512 ± 0.021
2.525GlnPro: 2.525 ± 0.035
2.653GlnGln: 2.653 ± 0.067
2.653GlnArg: 2.653 ± 0.028
3.052GlnSer: 3.052 ± 0.03
2.231GlnThr: 2.231 ± 0.027
2.068GlnVal: 2.068 ± 0.025
0.527GlnTrp: 0.527 ± 0.012
1.14GlnTyr: 1.14 ± 0.016
0.0GlnXaa: 0.0 ± 0.0
Arg
5.086ArgAla: 5.086 ± 0.041
0.724ArgCys: 0.724 ± 0.015
3.353ArgAsp: 3.353 ± 0.033
4.203ArgGlu: 4.203 ± 0.039
1.992ArgPhe: 1.992 ± 0.022
4.322ArgGly: 4.322 ± 0.041
1.541ArgHis: 1.541 ± 0.023
2.834ArgIle: 2.834 ± 0.029
3.66ArgLys: 3.66 ± 0.033
5.325ArgLeu: 5.325 ± 0.038
1.399ArgMet: 1.399 ± 0.016
2.341ArgAsn: 2.341 ± 0.023
3.578ArgPro: 3.578 ± 0.036
2.665ArgGln: 2.665 ± 0.029
5.541ArgArg: 5.541 ± 0.058
4.837ArgSer: 4.837 ± 0.048
3.373ArgThr: 3.373 ± 0.031
3.431ArgVal: 3.431 ± 0.034
0.831ArgTrp: 0.831 ± 0.014
1.539ArgTyr: 1.539 ± 0.02
0.0ArgXaa: 0.0 ± 0.0
Ser
6.818SerAla: 6.818 ± 0.044
0.779SerCys: 0.779 ± 0.016
4.155SerAsp: 4.155 ± 0.033
4.234SerGlu: 4.234 ± 0.037
2.798SerPhe: 2.798 ± 0.027
5.549SerGly: 5.549 ± 0.041
1.876SerHis: 1.876 ± 0.022
3.935SerIle: 3.935 ± 0.034
3.909SerLys: 3.909 ± 0.035
6.939SerLeu: 6.939 ± 0.049
1.706SerMet: 1.706 ± 0.021
2.992SerAsn: 2.992 ± 0.031
5.783SerPro: 5.783 ± 0.057
3.231SerGln: 3.231 ± 0.037
5.044SerArg: 5.044 ± 0.043
8.488SerSer: 8.488 ± 0.075
5.579SerThr: 5.579 ± 0.046
4.389SerVal: 4.389 ± 0.035
0.982SerTrp: 0.982 ± 0.016
1.999SerTyr: 1.999 ± 0.022
0.0SerXaa: 0.0 ± 0.0
Thr
5.411ThrAla: 5.411 ± 0.039
0.668ThrCys: 0.668 ± 0.016
2.787ThrAsp: 2.787 ± 0.028
3.261ThrGlu: 3.261 ± 0.033
2.119ThrPhe: 2.119 ± 0.024
4.049ThrGly: 4.049 ± 0.032
1.298ThrHis: 1.298 ± 0.019
3.066ThrIle: 3.066 ± 0.03
2.828ThrLys: 2.828 ± 0.03
5.151ThrLeu: 5.151 ± 0.041
1.232ThrMet: 1.232 ± 0.015
2.098ThrAsn: 2.098 ± 0.023
4.722ThrPro: 4.722 ± 0.046
2.097ThrGln: 2.097 ± 0.025
3.226ThrArg: 3.226 ± 0.031
5.395ThrSer: 5.395 ± 0.041
4.646ThrThr: 4.646 ± 0.053
3.533ThrVal: 3.533 ± 0.037
0.736ThrTrp: 0.736 ± 0.012
1.531ThrTyr: 1.531 ± 0.02
0.0ThrXaa: 0.0 ± 0.0
Val
5.522ValAla: 5.522 ± 0.049
0.744ValCys: 0.744 ± 0.016
3.706ValAsp: 3.706 ± 0.035
4.289ValGlu: 4.289 ± 0.047
2.225ValPhe: 2.225 ± 0.026
4.207ValGly: 4.207 ± 0.036
1.257ValHis: 1.257 ± 0.017
2.843ValIle: 2.843 ± 0.026
3.109ValLys: 3.109 ± 0.028
5.328ValLeu: 5.328 ± 0.042
1.345ValMet: 1.345 ± 0.019
2.093ValAsn: 2.093 ± 0.025
3.5ValPro: 3.5 ± 0.031
2.218ValGln: 2.218 ± 0.022
3.501ValArg: 3.501 ± 0.033
4.326ValSer: 4.326 ± 0.031
3.368ValThr: 3.368 ± 0.028
4.452ValVal: 4.452 ± 0.041
0.816ValTrp: 0.816 ± 0.015
1.568ValTyr: 1.568 ± 0.022
0.0ValXaa: 0.0 ± 0.0
Trp
1.055TrpAla: 1.055 ± 0.018
0.167TrpCys: 0.167 ± 0.006
0.807TrpAsp: 0.807 ± 0.016
0.853TrpGlu: 0.853 ± 0.015
0.488TrpPhe: 0.488 ± 0.013
0.932TrpGly: 0.932 ± 0.018
0.301TrpHis: 0.301 ± 0.01
0.621TrpIle: 0.621 ± 0.013
0.757TrpLys: 0.757 ± 0.014
1.134TrpLeu: 1.134 ± 0.019
0.357TrpMet: 0.357 ± 0.009
0.552TrpAsn: 0.552 ± 0.012
0.528TrpPro: 0.528 ± 0.011
0.487TrpGln: 0.487 ± 0.012
0.907TrpArg: 0.907 ± 0.016
0.968TrpSer: 0.968 ± 0.017
0.785TrpThr: 0.785 ± 0.014
0.838TrpVal: 0.838 ± 0.015
0.238TrpTrp: 0.238 ± 0.008
0.343TrpTyr: 0.343 ± 0.009
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.023TyrAla: 2.023 ± 0.026
0.386TyrCys: 0.386 ± 0.01
1.606TyrAsp: 1.606 ± 0.021
1.524TyrGlu: 1.524 ± 0.021
1.063TyrPhe: 1.063 ± 0.017
1.974TyrGly: 1.974 ± 0.028
0.666TyrHis: 0.666 ± 0.014
1.359TyrIle: 1.359 ± 0.019
1.148TyrLys: 1.148 ± 0.016
2.474TyrLeu: 2.474 ± 0.029
0.592TyrMet: 0.592 ± 0.011
1.128TyrAsn: 1.128 ± 0.02
1.375TyrPro: 1.375 ± 0.019
1.046TyrGln: 1.046 ± 0.018
1.499TyrArg: 1.499 ± 0.019
1.975TyrSer: 1.975 ± 0.022
1.554TyrThr: 1.554 ± 0.021
1.476TyrVal: 1.476 ± 0.018
0.341TyrTrp: 0.341 ± 0.01
0.855TyrTyr: 0.855 ± 0.017
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.001XaaXaa: 0.001 ± 0.001
Statistics based on 9122 proteins (4068599 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski