Mycobacterium virus Nepal

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 100 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I3WU61|I3WU61_9CAUD Putative minor tail protein OS=Mycobacterium virus Nepal OX=1194642 GN=NEPAL_29 PE=4 SV=1
MM1 pKa = 7.61GFTLRR6 pKa = 11.84LFGIPVLGLEE16 pKa = 4.12ITGDD20 pKa = 3.77GSAEE24 pKa = 3.94EE25 pKa = 4.62YY26 pKa = 10.64INLTGGSFEE35 pKa = 4.65LAPEE39 pKa = 3.98EE40 pKa = 4.15PEE42 pKa = 3.9YY43 pKa = 11.13DD44 pKa = 3.29EE45 pKa = 5.61EE46 pKa = 4.95YY47 pKa = 10.82YY48 pKa = 10.93EE49 pKa = 4.22EE50 pKa = 4.6DD51 pKa = 3.1RR52 pKa = 11.84SGFGFGVSS60 pKa = 3.28

Molecular weight: 6.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I3WU73|I3WU73_9CAUD Uncharacterized protein OS=Mycobacterium virus Nepal OX=1194642 GN=NEPAL_44 PE=4 SV=1
MM1 pKa = 7.57SKK3 pKa = 10.36HH4 pKa = 5.97EE5 pKa = 4.13YY6 pKa = 10.38VGGFTADD13 pKa = 3.56PEE15 pKa = 4.5QFAHH19 pKa = 6.75LWVQGHH25 pKa = 5.95LARR28 pKa = 11.84RR29 pKa = 11.84LGLAHH34 pKa = 6.0VRR36 pKa = 11.84EE37 pKa = 4.85SVSGRR42 pKa = 11.84HH43 pKa = 5.61RR44 pKa = 11.84LPDD47 pKa = 3.18VRR49 pKa = 11.84FSQEE53 pKa = 3.84LPGGTVYY60 pKa = 10.53WSVNRR65 pKa = 11.84KK66 pKa = 9.3GFFRR70 pKa = 11.84RR71 pKa = 11.84DD72 pKa = 3.17DD73 pKa = 3.85SLPSGWVQRR82 pKa = 11.84IYY84 pKa = 10.86PRR86 pKa = 11.84VATSFRR92 pKa = 11.84TAEE95 pKa = 3.85

Molecular weight: 10.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

100

0

100

17232

24

826

172.3

18.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.477 ± 0.373

0.824 ± 0.123

6.43 ± 0.191

6.5 ± 0.252

3.076 ± 0.164

9.018 ± 0.47

1.921 ± 0.159

4.788 ± 0.197

4.138 ± 0.228

8.426 ± 0.218

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.124 ± 0.115

3.151 ± 0.13

5.617 ± 0.251

3.244 ± 0.154

6.79 ± 0.41

6.076 ± 0.27

6.291 ± 0.259

7.254 ± 0.192

1.99 ± 0.125

2.867 ± 0.181
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski