Amino acid dipepetide frequency for Turkey associated porprismacovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.407AlaAla: 3.407 ± 0.405
1.704AlaCys: 1.704 ± 0.962
6.814AlaAsp: 6.814 ± 3.847
0.0AlaGlu: 0.0 ± 0.0
1.704AlaPhe: 1.704 ± 0.962
6.814AlaGly: 6.814 ± 3.847
1.704AlaHis: 1.704 ± 1.366
5.111AlaIle: 5.111 ± 0.557
3.407AlaLys: 3.407 ± 1.924
10.221AlaLeu: 10.221 ± 3.542
1.704AlaMet: 1.704 ± 0.962
3.407AlaAsn: 3.407 ± 0.405
1.704AlaPro: 1.704 ± 0.962
1.704AlaGln: 1.704 ± 1.366
3.407AlaArg: 3.407 ± 0.405
5.111AlaSer: 5.111 ± 0.557
0.0AlaThr: 0.0 ± 0.0
5.111AlaVal: 5.111 ± 2.886
1.704AlaTrp: 1.704 ± 0.962
5.111AlaTyr: 5.111 ± 0.557
0.0AlaXaa: 0.0 ± 0.0
Cys
3.407CysAla: 3.407 ± 0.405
0.0CysCys: 0.0 ± 0.0
1.704CysAsp: 1.704 ± 0.962
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.704CysGly: 1.704 ± 1.366
0.0CysHis: 0.0 ± 0.0
1.704CysIle: 1.704 ± 1.366
3.407CysLys: 3.407 ± 2.733
1.704CysLeu: 1.704 ± 1.366
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.704CysTyr: 1.704 ± 1.366
0.0CysXaa: 0.0 ± 0.0
Asp
5.111AspAla: 5.111 ± 0.557
1.704AspCys: 1.704 ± 1.366
0.0AspAsp: 0.0 ± 0.0
3.407AspGlu: 3.407 ± 2.733
0.0AspPhe: 0.0 ± 0.0
5.111AspGly: 5.111 ± 1.771
0.0AspHis: 0.0 ± 0.0
3.407AspIle: 3.407 ± 0.405
3.407AspLys: 3.407 ± 0.405
3.407AspLeu: 3.407 ± 1.924
1.704AspMet: 1.704 ± 0.962
0.0AspAsn: 0.0 ± 0.0
3.407AspPro: 3.407 ± 1.924
3.407AspGln: 3.407 ± 0.405
5.111AspArg: 5.111 ± 4.099
5.111AspSer: 5.111 ± 2.886
8.518AspThr: 8.518 ± 0.153
5.111AspVal: 5.111 ± 0.557
0.0AspTrp: 0.0 ± 0.0
1.704AspTyr: 1.704 ± 0.962
0.0AspXaa: 0.0 ± 0.0
Glu
5.111GluAla: 5.111 ± 0.557
1.704GluCys: 1.704 ± 1.366
0.0GluAsp: 0.0 ± 0.0
1.704GluGlu: 1.704 ± 1.366
5.111GluPhe: 5.111 ± 1.771
3.407GluGly: 3.407 ± 0.405
1.704GluHis: 1.704 ± 1.366
0.0GluIle: 0.0 ± 0.0
1.704GluLys: 1.704 ± 0.962
0.0GluLeu: 0.0 ± 0.0
1.704GluMet: 1.704 ± 0.962
1.704GluAsn: 1.704 ± 0.962
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
6.814GluArg: 6.814 ± 5.466
5.111GluSer: 5.111 ± 0.557
5.111GluThr: 5.111 ± 1.771
1.704GluVal: 1.704 ± 1.366
0.0GluTrp: 0.0 ± 0.0
1.704GluTyr: 1.704 ± 0.962
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
1.704PheCys: 1.704 ± 1.366
0.0PheAsp: 0.0 ± 0.0
1.704PheGlu: 1.704 ± 1.366
3.407PhePhe: 3.407 ± 0.405
5.111PheGly: 5.111 ± 0.557
0.0PheHis: 0.0 ± 0.0
0.0PheIle: 0.0 ± 0.0
1.704PheLys: 1.704 ± 1.366
0.0PheLeu: 0.0 ± 0.0
1.704PheMet: 1.704 ± 0.929
5.111PheAsn: 5.111 ± 2.886
0.0PhePro: 0.0 ± 0.0
3.407PheGln: 3.407 ± 1.924
1.704PheArg: 1.704 ± 0.962
1.704PheSer: 1.704 ± 0.962
1.704PheThr: 1.704 ± 0.962
5.111PheVal: 5.111 ± 2.886
1.704PheTrp: 1.704 ± 1.366
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
6.814GlyAla: 6.814 ± 1.519
0.0GlyCys: 0.0 ± 0.0
3.407GlyAsp: 3.407 ± 1.924
1.704GlyGlu: 1.704 ± 0.962
0.0GlyPhe: 0.0 ± 0.0
3.407GlyGly: 3.407 ± 0.405
0.0GlyHis: 0.0 ± 0.0
3.407GlyIle: 3.407 ± 1.924
6.814GlyLys: 6.814 ± 3.137
18.739GlyLeu: 18.739 ± 3.596
1.704GlyMet: 1.704 ± 0.962
1.704GlyAsn: 1.704 ± 1.366
3.407GlyPro: 3.407 ± 1.924
3.407GlyGln: 3.407 ± 0.405
0.0GlyArg: 0.0 ± 0.0
8.518GlySer: 8.518 ± 4.809
5.111GlyThr: 5.111 ± 0.557
5.111GlyVal: 5.111 ± 1.771
3.407GlyTrp: 3.407 ± 0.405
1.704GlyTyr: 1.704 ± 1.366
0.0GlyXaa: 0.0 ± 0.0
His
1.704HisAla: 1.704 ± 1.366
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
3.407HisGlu: 3.407 ± 1.924
0.0HisPhe: 0.0 ± 0.0
0.0HisGly: 0.0 ± 0.0
1.704HisHis: 1.704 ± 1.366
3.407HisIle: 3.407 ± 2.733
0.0HisLys: 0.0 ± 0.0
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
1.704HisGln: 1.704 ± 1.366
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
1.704HisThr: 1.704 ± 0.962
0.0HisVal: 0.0 ± 0.0
1.704HisTrp: 1.704 ± 1.366
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
1.704IleAla: 1.704 ± 0.962
0.0IleCys: 0.0 ± 0.0
5.111IleAsp: 5.111 ± 1.771
6.814IleGlu: 6.814 ± 3.137
1.704IlePhe: 1.704 ± 1.366
6.814IleGly: 6.814 ± 1.519
1.704IleHis: 1.704 ± 0.962
5.111IleIle: 5.111 ± 1.771
1.704IleLys: 1.704 ± 1.366
5.111IleLeu: 5.111 ± 2.886
5.111IleMet: 5.111 ± 1.771
3.407IleAsn: 3.407 ± 0.405
3.407IlePro: 3.407 ± 2.733
3.407IleGln: 3.407 ± 0.405
3.407IleArg: 3.407 ± 2.733
5.111IleSer: 5.111 ± 2.886
1.704IleThr: 1.704 ± 0.962
1.704IleVal: 1.704 ± 0.962
0.0IleTrp: 0.0 ± 0.0
1.704IleTyr: 1.704 ± 1.366
0.0IleXaa: 0.0 ± 0.0
Lys
3.407LysAla: 3.407 ± 0.405
1.704LysCys: 1.704 ± 0.962
1.704LysAsp: 1.704 ± 1.366
3.407LysGlu: 3.407 ± 2.733
1.704LysPhe: 1.704 ± 0.962
1.704LysGly: 1.704 ± 1.366
1.704LysHis: 1.704 ± 1.366
5.111LysIle: 5.111 ± 0.557
5.111LysLys: 5.111 ± 4.099
3.407LysLeu: 3.407 ± 2.733
3.407LysMet: 3.407 ± 1.924
1.704LysAsn: 1.704 ± 1.366
0.0LysPro: 0.0 ± 0.0
0.0LysGln: 0.0 ± 0.0
0.0LysArg: 0.0 ± 0.0
3.407LysSer: 3.407 ± 0.405
1.704LysThr: 1.704 ± 0.962
5.111LysVal: 5.111 ± 0.557
5.111LysTrp: 5.111 ± 4.099
1.704LysTyr: 1.704 ± 1.366
0.0LysXaa: 0.0 ± 0.0
Leu
6.814LeuAla: 6.814 ± 0.809
0.0LeuCys: 0.0 ± 0.0
3.407LeuAsp: 3.407 ± 0.405
1.704LeuGlu: 1.704 ± 0.962
0.0LeuPhe: 0.0 ± 0.0
0.0LeuGly: 0.0 ± 0.0
1.704LeuHis: 1.704 ± 1.366
8.518LeuIle: 8.518 ± 0.153
3.407LeuLys: 3.407 ± 0.405
5.111LeuLeu: 5.111 ± 0.557
0.0LeuMet: 0.0 ± 0.0
3.407LeuAsn: 3.407 ± 1.924
6.814LeuPro: 6.814 ± 1.519
6.814LeuGln: 6.814 ± 1.519
3.407LeuArg: 3.407 ± 0.405
5.111LeuSer: 5.111 ± 0.557
3.407LeuThr: 3.407 ± 0.405
5.111LeuVal: 5.111 ± 0.557
1.704LeuTrp: 1.704 ± 1.366
8.518LeuTyr: 8.518 ± 0.153
0.0LeuXaa: 0.0 ± 0.0
Met
1.704MetAla: 1.704 ± 0.962
0.0MetCys: 0.0 ± 0.0
1.704MetAsp: 1.704 ± 1.366
1.704MetGlu: 1.704 ± 0.962
1.704MetPhe: 1.704 ± 0.962
1.704MetGly: 1.704 ± 0.962
0.0MetHis: 0.0 ± 0.0
3.407MetIle: 3.407 ± 2.733
1.704MetLys: 1.704 ± 1.366
1.704MetLeu: 1.704 ± 0.962
0.0MetMet: 0.0 ± 0.0
1.704MetAsn: 1.704 ± 0.962
3.407MetPro: 3.407 ± 1.924
0.0MetGln: 0.0 ± 0.0
5.111MetArg: 5.111 ± 2.886
1.704MetSer: 1.704 ± 0.962
1.704MetThr: 1.704 ± 1.366
5.111MetVal: 5.111 ± 0.557
1.704MetTrp: 1.704 ± 0.962
1.704MetTyr: 1.704 ± 0.962
0.0MetXaa: 0.0 ± 0.0
Asn
0.0AsnAla: 0.0 ± 0.0
0.0AsnCys: 0.0 ± 0.0
6.814AsnAsp: 6.814 ± 3.137
1.704AsnGlu: 1.704 ± 0.962
1.704AsnPhe: 1.704 ± 0.962
5.111AsnGly: 5.111 ± 1.771
0.0AsnHis: 0.0 ± 0.0
6.814AsnIle: 6.814 ± 1.519
0.0AsnLys: 0.0 ± 0.0
1.704AsnLeu: 1.704 ± 0.962
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
1.704AsnPro: 1.704 ± 0.962
6.814AsnGln: 6.814 ± 3.847
1.704AsnArg: 1.704 ± 0.962
3.407AsnSer: 3.407 ± 1.924
1.704AsnThr: 1.704 ± 1.366
3.407AsnVal: 3.407 ± 0.405
1.704AsnTrp: 1.704 ± 0.962
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
8.518ProAla: 8.518 ± 2.481
0.0ProCys: 0.0 ± 0.0
0.0ProAsp: 0.0 ± 0.0
1.704ProGlu: 1.704 ± 0.962
0.0ProPhe: 0.0 ± 0.0
5.111ProGly: 5.111 ± 2.886
0.0ProHis: 0.0 ± 0.0
1.704ProIle: 1.704 ± 0.962
3.407ProLys: 3.407 ± 2.733
3.407ProLeu: 3.407 ± 1.924
0.0ProMet: 0.0 ± 0.0
1.704ProAsn: 1.704 ± 0.962
5.111ProPro: 5.111 ± 0.557
3.407ProGln: 3.407 ± 1.924
5.111ProArg: 5.111 ± 4.099
1.704ProSer: 1.704 ± 0.962
5.111ProThr: 5.111 ± 0.557
0.0ProVal: 0.0 ± 0.0
0.0ProTrp: 0.0 ± 0.0
1.704ProTyr: 1.704 ± 1.366
0.0ProXaa: 0.0 ± 0.0
Gln
3.407GlnAla: 3.407 ± 1.924
0.0GlnCys: 0.0 ± 0.0
1.704GlnAsp: 1.704 ± 0.962
1.704GlnGlu: 1.704 ± 1.366
6.814GlnPhe: 6.814 ± 1.519
3.407GlnGly: 3.407 ± 0.405
1.704GlnHis: 1.704 ± 0.962
3.407GlnIle: 3.407 ± 0.405
0.0GlnLys: 0.0 ± 0.0
5.111GlnLeu: 5.111 ± 0.557
0.0GlnMet: 0.0 ± 0.0
3.407GlnAsn: 3.407 ± 1.924
0.0GlnPro: 0.0 ± 0.0
1.704GlnGln: 1.704 ± 1.366
1.704GlnArg: 1.704 ± 1.366
3.407GlnSer: 3.407 ± 0.405
1.704GlnThr: 1.704 ± 0.962
1.704GlnVal: 1.704 ± 0.962
1.704GlnTrp: 1.704 ± 1.366
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.704ArgAla: 1.704 ± 1.366
0.0ArgCys: 0.0 ± 0.0
1.704ArgAsp: 1.704 ± 1.366
1.704ArgGlu: 1.704 ± 1.366
5.111ArgPhe: 5.111 ± 0.557
8.518ArgGly: 8.518 ± 2.176
0.0ArgHis: 0.0 ± 0.0
1.704ArgIle: 1.704 ± 1.366
3.407ArgLys: 3.407 ± 0.405
3.407ArgLeu: 3.407 ± 1.924
5.111ArgMet: 5.111 ± 0.557
0.0ArgAsn: 0.0 ± 0.0
3.407ArgPro: 3.407 ± 2.733
1.704ArgGln: 1.704 ± 1.366
0.0ArgArg: 0.0 ± 0.0
5.111ArgSer: 5.111 ± 1.771
1.704ArgThr: 1.704 ± 0.962
3.407ArgVal: 3.407 ± 0.405
1.704ArgTrp: 1.704 ± 1.366
1.704ArgTyr: 1.704 ± 1.366
0.0ArgXaa: 0.0 ± 0.0
Ser
8.518SerAla: 8.518 ± 4.809
1.704SerCys: 1.704 ± 1.366
6.814SerAsp: 6.814 ± 0.809
1.704SerGlu: 1.704 ± 0.962
0.0SerPhe: 0.0 ± 0.0
3.407SerGly: 3.407 ± 1.924
0.0SerHis: 0.0 ± 0.0
5.111SerIle: 5.111 ± 0.557
0.0SerLys: 0.0 ± 0.0
1.704SerLeu: 1.704 ± 0.962
8.518SerMet: 8.518 ± 5.327
6.814SerAsn: 6.814 ± 1.519
1.704SerPro: 1.704 ± 0.962
3.407SerGln: 3.407 ± 1.924
5.111SerArg: 5.111 ± 0.557
5.111SerSer: 5.111 ± 0.557
6.814SerThr: 6.814 ± 1.519
5.111SerVal: 5.111 ± 0.557
3.407SerTrp: 3.407 ± 2.733
0.0SerTyr: 0.0 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.704ThrAla: 1.704 ± 0.962
0.0ThrCys: 0.0 ± 0.0
1.704ThrAsp: 1.704 ± 0.962
0.0ThrGlu: 0.0 ± 0.0
1.704ThrPhe: 1.704 ± 0.962
8.518ThrGly: 8.518 ± 4.809
1.704ThrHis: 1.704 ± 0.962
1.704ThrIle: 1.704 ± 0.962
3.407ThrLys: 3.407 ± 1.924
5.111ThrLeu: 5.111 ± 4.099
1.704ThrMet: 1.704 ± 0.962
3.407ThrAsn: 3.407 ± 2.733
3.407ThrPro: 3.407 ± 0.405
0.0ThrGln: 0.0 ± 0.0
1.704ThrArg: 1.704 ± 1.366
8.518ThrSer: 8.518 ± 0.153
3.407ThrThr: 3.407 ± 1.924
6.814ThrVal: 6.814 ± 3.137
1.704ThrTrp: 1.704 ± 0.962
1.704ThrTyr: 1.704 ± 0.962
0.0ThrXaa: 0.0 ± 0.0
Val
5.111ValAla: 5.111 ± 0.557
0.0ValCys: 0.0 ± 0.0
10.221ValAsp: 10.221 ± 1.115
3.407ValGlu: 3.407 ± 0.405
1.704ValPhe: 1.704 ± 0.962
6.814ValGly: 6.814 ± 1.519
0.0ValHis: 0.0 ± 0.0
1.704ValIle: 1.704 ± 1.366
5.111ValLys: 5.111 ± 1.771
3.407ValLeu: 3.407 ± 2.733
1.704ValMet: 1.704 ± 1.366
6.814ValAsn: 6.814 ± 1.519
6.814ValPro: 6.814 ± 0.809
0.0ValGln: 0.0 ± 0.0
1.704ValArg: 1.704 ± 0.962
6.814ValSer: 6.814 ± 3.847
3.407ValThr: 3.407 ± 0.405
3.407ValVal: 3.407 ± 1.924
1.704ValTrp: 1.704 ± 1.366
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
3.407TrpCys: 3.407 ± 2.733
0.0TrpAsp: 0.0 ± 0.0
1.704TrpGlu: 1.704 ± 1.366
3.407TrpPhe: 3.407 ± 0.405
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.704TrpIle: 1.704 ± 1.366
1.704TrpLys: 1.704 ± 1.366
1.704TrpLeu: 1.704 ± 0.962
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
1.704TrpPro: 1.704 ± 0.962
1.704TrpGln: 1.704 ± 1.366
3.407TrpArg: 3.407 ± 0.405
1.704TrpSer: 1.704 ± 1.366
3.407TrpThr: 3.407 ± 0.405
1.704TrpVal: 1.704 ± 1.366
0.0TrpTrp: 0.0 ± 0.0
1.704TrpTyr: 1.704 ± 1.366
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.704TyrAla: 1.704 ± 0.962
1.704TyrCys: 1.704 ± 1.366
6.814TyrAsp: 6.814 ± 0.809
5.111TyrGlu: 5.111 ± 1.771
0.0TyrPhe: 0.0 ± 0.0
1.704TyrGly: 1.704 ± 0.962
1.704TyrHis: 1.704 ± 1.366
1.704TyrIle: 1.704 ± 1.366
1.704TyrLys: 1.704 ± 0.962
0.0TyrLeu: 0.0 ± 0.0
1.704TyrMet: 1.704 ± 1.366
0.0TyrAsn: 0.0 ± 0.0
1.704TyrPro: 1.704 ± 0.962
0.0TyrGln: 0.0 ± 0.0
1.704TyrArg: 1.704 ± 0.962
0.0TyrSer: 0.0 ± 0.0
0.0TyrThr: 0.0 ± 0.0
5.111TyrVal: 5.111 ± 1.771
0.0TyrTrp: 0.0 ± 0.0
3.407TyrTyr: 3.407 ± 1.924
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (588 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski