Aminivibrio pyruvatiphilus

Taxonomy: cellular organisms; Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminivibrio

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2990 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R8M2W7|A0A4R8M2W7_9BACT Amino acid/amide ABC transporter membrane protein 1 (HAAT family) OS=Aminivibrio pyruvatiphilus OX=1005740 GN=C8D99_11357 PE=4 SV=1
MM1 pKa = 7.51KK2 pKa = 10.22KK3 pKa = 10.16YY4 pKa = 10.18VCTVCGYY11 pKa = 10.9VYY13 pKa = 10.63DD14 pKa = 4.41PAEE17 pKa = 4.67GDD19 pKa = 3.67PDD21 pKa = 4.0SGVAPGTAFEE31 pKa = 5.97DD32 pKa = 4.28IPDD35 pKa = 3.7DD36 pKa = 3.88WVCPVCAVGKK46 pKa = 10.57DD47 pKa = 3.28MFEE50 pKa = 4.35PEE52 pKa = 4.01EE53 pKa = 3.99

Molecular weight: 5.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R8MGU1|A0A4R8MGU1_9BACT 2-methylcitrate dehydratase PrpD OS=Aminivibrio pyruvatiphilus OX=1005740 GN=C8D99_102126 PE=3 SV=1
MM1 pKa = 7.23NRR3 pKa = 11.84LNGKK7 pKa = 9.79LSGGRR12 pKa = 11.84IRR14 pKa = 11.84PRR16 pKa = 11.84SFFEE20 pKa = 3.88PPRR23 pKa = 11.84AEE25 pKa = 4.41DD26 pKa = 3.91LPTVSLQMKK35 pKa = 9.09GRR37 pKa = 11.84KK38 pKa = 8.65FDD40 pKa = 3.7PGMVIGTARR49 pKa = 11.84RR50 pKa = 11.84CVFGLPSVIVCSPLRR65 pKa = 11.84DD66 pKa = 3.49GKK68 pKa = 9.91PFPTTFWLTCPHH80 pKa = 6.65LVKK83 pKa = 10.88LCGALEE89 pKa = 4.25SEE91 pKa = 4.67GAVAEE96 pKa = 4.14LEE98 pKa = 4.16RR99 pKa = 11.84RR100 pKa = 11.84RR101 pKa = 11.84MEE103 pKa = 5.71RR104 pKa = 11.84PDD106 pKa = 3.54LWTEE110 pKa = 3.76YY111 pKa = 11.15NLFHH115 pKa = 7.29ARR117 pKa = 11.84LRR119 pKa = 11.84LLLVQPAAARR129 pKa = 11.84FLRR132 pKa = 11.84KK133 pKa = 9.46YY134 pKa = 10.49RR135 pKa = 11.84RR136 pKa = 11.84GVWDD140 pKa = 3.35TLRR143 pKa = 11.84RR144 pKa = 11.84GGAGGIDD151 pKa = 3.7YY152 pKa = 10.61LSRR155 pKa = 11.84ARR157 pKa = 11.84GGAKK161 pKa = 9.81CLHH164 pKa = 6.29LQAASWLALGFHH176 pKa = 7.12PAGEE180 pKa = 4.39FLHH183 pKa = 6.53KK184 pKa = 10.72ALVPLHH190 pKa = 6.44CAAPAASGCVRR201 pKa = 11.84RR202 pKa = 11.84CC203 pKa = 3.03

Molecular weight: 22.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2990

0

2990

1007143

26

2953

336.8

36.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.837 ± 0.059

1.157 ± 0.018

4.934 ± 0.033

7.036 ± 0.048

4.396 ± 0.031

9.202 ± 0.045

1.604 ± 0.016

5.361 ± 0.04

4.458 ± 0.036

10.532 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.707 ± 0.022

2.688 ± 0.027

4.922 ± 0.033

2.234 ± 0.021

6.569 ± 0.042

6.381 ± 0.031

4.79 ± 0.029

7.541 ± 0.038

1.206 ± 0.016

2.445 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski