Saimiriine herpesvirus 1 (strain MV-5-4-PSL) (SaHV-1) (Marmoset herpesvirus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Simplexvirus

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E2IUG7|E2IUG7_SHV1 Nuclear protein UL3 OS=Saimiriine herpesvirus 1 (strain MV-5-4-PSL) OX=10353 GN=UL03 PE=3 SV=1
MM1 pKa = 7.98DD2 pKa = 5.85PSSQLSLVAYY12 pKa = 6.88TLRR15 pKa = 11.84NARR18 pKa = 11.84GPTTWKK24 pKa = 10.71LYY26 pKa = 8.71DD27 pKa = 3.53TEE29 pKa = 5.8HH30 pKa = 6.53IVSTFDD36 pKa = 2.99SGVRR40 pKa = 11.84YY41 pKa = 9.52VATAGRR47 pKa = 11.84LRR49 pKa = 11.84QDD51 pKa = 3.64PLDD54 pKa = 4.19GGSVVLQDD62 pKa = 3.5TPGGVVVVVNCPADD76 pKa = 3.81FCAYY80 pKa = 9.83RR81 pKa = 11.84FVGRR85 pKa = 11.84TQGHH89 pKa = 5.97VLRR92 pKa = 11.84QWEE95 pKa = 4.23DD96 pKa = 2.58TGMCVYY102 pKa = 10.5PFDD105 pKa = 3.55AWTGSTHH112 pKa = 5.26TEE114 pKa = 4.12SVRR117 pKa = 11.84SASAGTAIVLWCDD130 pKa = 3.04DD131 pKa = 3.75SLYY134 pKa = 9.51ITATVCDD141 pKa = 4.67ADD143 pKa = 4.51PPADD147 pKa = 3.75SPTARR152 pKa = 11.84VDD154 pKa = 3.5EE155 pKa = 4.72TPGSLLEE162 pKa = 4.64DD163 pKa = 3.16AHH165 pKa = 6.88EE166 pKa = 4.33EE167 pKa = 3.96LLAGDD172 pKa = 3.75SEE174 pKa = 4.6ARR176 pKa = 11.84VAADD180 pKa = 4.38LLTEE184 pKa = 4.22VLDD187 pKa = 4.06QVQLGPASSFEE198 pKa = 3.97GCARR202 pKa = 11.84GAQQ205 pKa = 3.4

Molecular weight: 21.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E2IUG9|E2IUG9_SHV1 Envelope glycoprotein L OS=Saimiriine herpesvirus 1 (strain MV-5-4-PSL) OX=10353 GN=UL01 PE=3 SV=1
MM1 pKa = 7.39KK2 pKa = 10.32RR3 pKa = 11.84QATPDD8 pKa = 3.39SRR10 pKa = 11.84QLTLLAPQLPSPSNHH25 pKa = 6.63PPPLPEE31 pKa = 3.82SRR33 pKa = 11.84RR34 pKa = 11.84GAEE37 pKa = 3.98DD38 pKa = 3.58PKK40 pKa = 10.85TEE42 pKa = 4.21GSSAPDD48 pKa = 3.49VIEE51 pKa = 4.58PPLAAVAKK59 pKa = 9.86RR60 pKa = 11.84PRR62 pKa = 11.84RR63 pKa = 11.84PRR65 pKa = 11.84GCPLGVQFGGSPSAADD81 pKa = 3.1AVEE84 pKa = 4.65RR85 pKa = 11.84EE86 pKa = 4.35TASLFSPSSGVSDD99 pKa = 3.64RR100 pKa = 11.84TLDD103 pKa = 3.08WRR105 pKa = 11.84RR106 pKa = 11.84ARR108 pKa = 11.84DD109 pKa = 3.35VFGIGEE115 pKa = 4.17PWRR118 pKa = 11.84DD119 pKa = 3.53VIEE122 pKa = 4.76PEE124 pKa = 3.88LAAAATSGLLSEE136 pKa = 4.38YY137 pKa = 10.13FRR139 pKa = 11.84RR140 pKa = 11.84CRR142 pKa = 11.84TEE144 pKa = 3.88EE145 pKa = 3.85VLPPRR150 pKa = 11.84GDD152 pKa = 3.34VFSWTRR158 pKa = 11.84SCAPDD163 pKa = 3.55DD164 pKa = 3.67VRR166 pKa = 11.84VVIIGQDD173 pKa = 3.65PYY175 pKa = 10.43HH176 pKa = 6.66QPGQAHH182 pKa = 6.65GLAFSVRR189 pKa = 11.84PGVPVPPSLRR199 pKa = 11.84NIFTAVRR206 pKa = 11.84SCYY209 pKa = 10.14PEE211 pKa = 3.88ATPAAGHH218 pKa = 6.2GCLEE222 pKa = 3.62KK223 pKa = 10.01WARR226 pKa = 11.84QGVLLLNTTLTVRR239 pKa = 11.84RR240 pKa = 11.84GAAGSHH246 pKa = 6.36SGLGWGRR253 pKa = 11.84FVAGVLRR260 pKa = 11.84RR261 pKa = 11.84LAQRR265 pKa = 11.84RR266 pKa = 11.84DD267 pKa = 3.28GLVFMLWGQHH277 pKa = 4.63AQGAIKK283 pKa = 10.28PDD285 pKa = 3.77TQRR288 pKa = 11.84HH289 pKa = 4.23LVLRR293 pKa = 11.84FAHH296 pKa = 6.86PSPLSQTPFGTCRR309 pKa = 11.84HH310 pKa = 5.8FLLANQYY317 pKa = 10.71LEE319 pKa = 4.95ARR321 pKa = 11.84GLPPIDD327 pKa = 3.68WSLGPAPSLARR338 pKa = 11.84AKK340 pKa = 10.59

Molecular weight: 36.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

68

1

69

38775

76

3390

562.0

60.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.025 ± 0.557

1.782 ± 0.115

5.638 ± 0.175

5.594 ± 0.155

3.317 ± 0.187

7.319 ± 0.283

2.218 ± 0.107

2.507 ± 0.173

1.666 ± 0.118

9.439 ± 0.254

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.586 ± 0.097

1.95 ± 0.163

7.892 ± 0.445

2.545 ± 0.143

9.32 ± 0.28

7.51 ± 0.227

5.207 ± 0.196

6.894 ± 0.241

1.13 ± 0.065

2.463 ± 0.154
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski