Corynebacterium sp. 366

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; unclassified Corynebacterium

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1880 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I0FEE4|A0A6I0FEE4_9CORY Uncharacterized protein OS=Corynebacterium sp. 366 OX=2652251 GN=F8390_06140 PE=4 SV=1
MM1 pKa = 8.37IEE3 pKa = 3.99EE4 pKa = 4.38LKK6 pKa = 10.93SVGLAFPRR14 pKa = 11.84WQDD17 pKa = 3.37ALEE20 pKa = 4.01TAYY23 pKa = 11.03SSGQLFVSGEE33 pKa = 3.93VRR35 pKa = 11.84GGQVLQYY42 pKa = 10.86DD43 pKa = 4.31DD44 pKa = 4.98ASGARR49 pKa = 11.84LVVMAVEE56 pKa = 4.22PFGTFASYY64 pKa = 10.53FGGVSTSAHH73 pKa = 5.03VSMVDD78 pKa = 4.34DD79 pKa = 4.83IIGVIDD85 pKa = 4.03VVDD88 pKa = 5.06DD89 pKa = 4.23SPALQTSGQQAPVVASVAATIAQGPMLSDD118 pKa = 4.0EE119 pKa = 5.1PPLEE123 pKa = 4.05YY124 pKa = 10.59QQVQVSALATSVEE137 pKa = 4.41VFTDD141 pKa = 3.94PSMLTAAGITGTPGTIEE158 pKa = 3.99ATGLTDD164 pKa = 4.58LNSGSTSPHH173 pKa = 5.7ASASIVVEE181 pKa = 4.14TSAVGRR187 pKa = 11.84RR188 pKa = 11.84TNQLTGQQFWACSVHH203 pKa = 7.32APFDD207 pKa = 3.77FTLLIPADD215 pKa = 3.76VADD218 pKa = 4.13IASLAIDD225 pKa = 3.91DD226 pKa = 4.73AGAPRR231 pKa = 11.84SLIIAGQVQFTATVVDD247 pKa = 4.23APGCGGSGGCGSGGCGCGGHH267 pKa = 6.68

Molecular weight: 27.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I0FMC1|A0A6I0FMC1_9CORY DNA helicase OS=Corynebacterium sp. 366 OX=2652251 GN=F8390_02930 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.22GRR42 pKa = 11.84KK43 pKa = 9.07SLTAA47 pKa = 4.07

Molecular weight: 5.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1880

0

1880

638581

24

1680

339.7

36.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.42 ± 0.075

0.74 ± 0.014

6.072 ± 0.046

6.319 ± 0.057

3.197 ± 0.032

8.354 ± 0.051

2.354 ± 0.025

4.93 ± 0.042

3.343 ± 0.05

9.33 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.309 ± 0.027

2.905 ± 0.039

5.004 ± 0.04

3.611 ± 0.032

6.153 ± 0.055

6.12 ± 0.044

6.123 ± 0.037

8.209 ± 0.05

1.371 ± 0.023

2.138 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski