Amino acid dipepetide frequency for Maize fine streak nucleorhabdovirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.247AlaAla: 2.247 ± 1.365
0.25AlaCys: 0.25 ± 0.299
3.246AlaAsp: 3.246 ± 0.777
3.246AlaGlu: 3.246 ± 0.899
2.247AlaPhe: 2.247 ± 1.074
2.247AlaGly: 2.247 ± 1.048
0.999AlaHis: 0.999 ± 0.405
3.246AlaIle: 3.246 ± 0.862
1.998AlaLys: 1.998 ± 0.919
5.243AlaLeu: 5.243 ± 0.958
1.748AlaMet: 1.748 ± 0.652
2.247AlaAsn: 2.247 ± 0.45
1.748AlaPro: 1.748 ± 0.752
0.749AlaGln: 0.749 ± 0.58
3.745AlaArg: 3.745 ± 0.698
3.995AlaSer: 3.995 ± 2.286
4.245AlaThr: 4.245 ± 0.971
1.748AlaVal: 1.748 ± 0.602
0.749AlaTrp: 0.749 ± 0.47
2.247AlaTyr: 2.247 ± 0.653
0.0AlaXaa: 0.0 ± 0.0
Cys
0.499CysAla: 0.499 ± 0.597
0.0CysCys: 0.0 ± 0.0
2.497CysAsp: 2.497 ± 1.012
0.749CysGlu: 0.749 ± 0.273
0.749CysPhe: 0.749 ± 0.273
0.499CysGly: 0.499 ± 0.313
0.25CysHis: 0.25 ± 0.157
0.499CysIle: 0.499 ± 0.313
0.999CysLys: 0.999 ± 0.535
1.248CysLeu: 1.248 ± 0.783
0.999CysMet: 0.999 ± 0.388
0.25CysAsn: 0.25 ± 0.299
0.25CysPro: 0.25 ± 0.299
0.499CysGln: 0.499 ± 0.332
1.498CysArg: 1.498 ± 1.275
2.247CysSer: 2.247 ± 0.599
0.25CysThr: 0.25 ± 0.299
0.25CysVal: 0.25 ± 0.384
0.0CysTrp: 0.0 ± 0.0
0.999CysTyr: 0.999 ± 0.626
0.0CysXaa: 0.0 ± 0.0
Asp
2.747AspAla: 2.747 ± 1.089
0.25AspCys: 0.25 ± 0.157
4.494AspAsp: 4.494 ± 1.442
5.493AspGlu: 5.493 ± 0.896
1.998AspPhe: 1.998 ± 0.484
2.996AspGly: 2.996 ± 0.857
0.749AspHis: 0.749 ± 0.344
4.994AspIle: 4.994 ± 1.822
4.245AspLys: 4.245 ± 0.98
4.494AspLeu: 4.494 ± 0.844
2.747AspMet: 2.747 ± 0.477
2.497AspAsn: 2.497 ± 0.489
3.246AspPro: 3.246 ± 0.967
1.998AspGln: 1.998 ± 0.758
3.246AspArg: 3.246 ± 1.105
3.995AspSer: 3.995 ± 1.203
3.745AspThr: 3.745 ± 0.945
2.497AspVal: 2.497 ± 1.126
0.999AspTrp: 0.999 ± 0.375
1.498AspTyr: 1.498 ± 0.554
0.0AspXaa: 0.0 ± 0.0
Glu
2.247GluAla: 2.247 ± 0.638
1.998GluCys: 1.998 ± 0.958
3.496GluAsp: 3.496 ± 1.388
5.743GluGlu: 5.743 ± 1.609
1.998GluPhe: 1.998 ± 0.634
3.496GluGly: 3.496 ± 0.874
1.248GluHis: 1.248 ± 0.476
5.743GluIle: 5.743 ± 1.667
4.245GluLys: 4.245 ± 0.72
5.493GluLeu: 5.493 ± 1.322
1.248GluMet: 1.248 ± 1.057
1.748GluAsn: 1.748 ± 0.505
2.747GluPro: 2.747 ± 0.716
2.247GluGln: 2.247 ± 1.087
2.497GluArg: 2.497 ± 0.858
5.743GluSer: 5.743 ± 1.317
2.996GluThr: 2.996 ± 0.669
3.246GluVal: 3.246 ± 1.108
0.0GluTrp: 0.0 ± 0.0
3.496GluTyr: 3.496 ± 0.427
0.0GluXaa: 0.0 ± 0.0
Phe
1.248PheAla: 1.248 ± 0.598
0.749PheCys: 0.749 ± 0.701
1.498PheAsp: 1.498 ± 0.935
0.499PheGlu: 0.499 ± 0.283
1.498PhePhe: 1.498 ± 0.733
1.998PheGly: 1.998 ± 0.843
0.749PheHis: 0.749 ± 0.47
2.497PheIle: 2.497 ± 0.623
3.246PheLys: 3.246 ± 0.837
4.744PheLeu: 4.744 ± 2.294
1.498PheMet: 1.498 ± 0.629
1.498PheAsn: 1.498 ± 0.531
1.498PhePro: 1.498 ± 0.673
1.248PheGln: 1.248 ± 0.652
2.247PheArg: 2.247 ± 0.542
3.246PheSer: 3.246 ± 1.159
2.996PheThr: 2.996 ± 0.894
3.246PheVal: 3.246 ± 0.961
0.25PheTrp: 0.25 ± 0.299
1.498PheTyr: 1.498 ± 0.733
0.0PheXaa: 0.0 ± 0.0
Gly
2.247GlyAla: 2.247 ± 0.841
0.749GlyCys: 0.749 ± 0.35
3.496GlyAsp: 3.496 ± 0.56
3.745GlyGlu: 3.745 ± 1.425
1.748GlyPhe: 1.748 ± 0.276
3.496GlyGly: 3.496 ± 1.009
0.749GlyHis: 0.749 ± 0.336
4.494GlyIle: 4.494 ± 1.157
4.245GlyLys: 4.245 ± 0.83
5.993GlyLeu: 5.993 ± 0.74
1.248GlyMet: 1.248 ± 0.509
1.748GlyAsn: 1.748 ± 0.957
1.248GlyPro: 1.248 ± 0.357
1.748GlyGln: 1.748 ± 1.173
1.998GlyArg: 1.998 ± 0.558
4.245GlySer: 4.245 ± 1.056
2.996GlyThr: 2.996 ± 0.858
2.497GlyVal: 2.497 ± 0.585
0.999GlyTrp: 0.999 ± 0.606
1.498GlyTyr: 1.498 ± 0.626
0.0GlyXaa: 0.0 ± 0.0
His
0.999HisAla: 0.999 ± 0.42
0.25HisCys: 0.25 ± 0.157
0.999HisAsp: 0.999 ± 0.352
1.248HisGlu: 1.248 ± 0.648
1.498HisPhe: 1.498 ± 0.547
1.998HisGly: 1.998 ± 0.551
1.248HisHis: 1.248 ± 0.58
1.248HisIle: 1.248 ± 0.503
0.749HisLys: 0.749 ± 0.313
2.497HisLeu: 2.497 ± 0.53
0.25HisMet: 0.25 ± 0.296
1.248HisAsn: 1.248 ± 0.551
0.999HisPro: 0.999 ± 0.571
0.25HisGln: 0.25 ± 0.157
1.248HisArg: 1.248 ± 0.544
0.749HisSer: 0.749 ± 0.387
1.498HisThr: 1.498 ± 0.346
1.248HisVal: 1.248 ± 0.532
0.25HisTrp: 0.25 ± 0.296
0.749HisTyr: 0.749 ± 0.503
0.0HisXaa: 0.0 ± 0.0
Ile
4.245IleAla: 4.245 ± 1.438
0.749IleCys: 0.749 ± 0.307
4.245IleAsp: 4.245 ± 0.897
4.245IleGlu: 4.245 ± 1.416
1.498IlePhe: 1.498 ± 0.648
3.995IleGly: 3.995 ± 1.932
3.246IleHis: 3.246 ± 0.854
5.993IleIle: 5.993 ± 1.89
4.744IleLys: 4.744 ± 0.863
6.492IleLeu: 6.492 ± 1.698
3.995IleMet: 3.995 ± 0.549
2.996IleAsn: 2.996 ± 0.778
3.995IlePro: 3.995 ± 0.991
2.247IleGln: 2.247 ± 0.535
2.996IleArg: 2.996 ± 0.908
6.492IleSer: 6.492 ± 1.53
6.742IleThr: 6.742 ± 1.016
2.996IleVal: 2.996 ± 1.024
0.999IleTrp: 0.999 ± 0.428
3.496IleTyr: 3.496 ± 1.233
0.0IleXaa: 0.0 ± 0.0
Lys
5.243LysAla: 5.243 ± 1.477
0.499LysCys: 0.499 ± 0.283
2.996LysAsp: 2.996 ± 0.722
6.242LysGlu: 6.242 ± 1.792
2.747LysPhe: 2.747 ± 0.752
4.245LysGly: 4.245 ± 1.184
0.999LysHis: 0.999 ± 0.626
4.744LysIle: 4.744 ± 0.872
6.242LysLys: 6.242 ± 1.308
5.993LysLeu: 5.993 ± 1.128
1.498LysMet: 1.498 ± 0.615
2.996LysAsn: 2.996 ± 0.607
3.496LysPro: 3.496 ± 1.008
2.247LysGln: 2.247 ± 1.057
2.996LysArg: 2.996 ± 0.838
4.245LysSer: 4.245 ± 1.001
4.494LysThr: 4.494 ± 1.644
3.496LysVal: 3.496 ± 1.104
1.748LysTrp: 1.748 ± 0.563
2.497LysTyr: 2.497 ± 0.598
0.0LysXaa: 0.0 ± 0.0
Leu
3.246LeuAla: 3.246 ± 0.454
1.998LeuCys: 1.998 ± 0.783
3.745LeuAsp: 3.745 ± 0.569
3.995LeuGlu: 3.995 ± 0.968
3.995LeuPhe: 3.995 ± 0.981
3.246LeuGly: 3.246 ± 0.58
2.247LeuHis: 2.247 ± 0.877
6.742LeuIle: 6.742 ± 1.328
8.739LeuLys: 8.739 ± 2.161
8.24LeuLeu: 8.24 ± 1.875
1.748LeuMet: 1.748 ± 0.541
5.743LeuAsn: 5.743 ± 1.3
3.496LeuPro: 3.496 ± 0.924
3.995LeuGln: 3.995 ± 0.812
5.743LeuArg: 5.743 ± 0.762
8.489LeuSer: 8.489 ± 1.116
7.241LeuThr: 7.241 ± 1.432
5.993LeuVal: 5.993 ± 1.273
1.748LeuTrp: 1.748 ± 0.468
3.745LeuTyr: 3.745 ± 0.367
0.0LeuXaa: 0.0 ± 0.0
Met
2.747MetAla: 2.747 ± 1.334
0.749MetCys: 0.749 ± 0.348
2.747MetAsp: 2.747 ± 1.246
1.748MetGlu: 1.748 ± 0.541
0.749MetPhe: 0.749 ± 0.348
0.999MetGly: 0.999 ± 0.535
0.25MetHis: 0.25 ± 0.297
1.498MetIle: 1.498 ± 0.757
3.745MetLys: 3.745 ± 1.496
2.247MetLeu: 2.247 ± 0.956
1.748MetMet: 1.748 ± 0.731
0.999MetAsn: 0.999 ± 0.345
0.25MetPro: 0.25 ± 0.157
1.248MetGln: 1.248 ± 0.477
2.247MetArg: 2.247 ± 0.672
2.747MetSer: 2.747 ± 1.112
2.247MetThr: 2.247 ± 0.565
0.999MetVal: 0.999 ± 0.345
0.25MetTrp: 0.25 ± 0.157
0.999MetTyr: 0.999 ± 0.579
0.0MetXaa: 0.0 ± 0.0
Asn
1.748AsnAla: 1.748 ± 0.88
1.248AsnCys: 1.248 ± 0.506
1.998AsnAsp: 1.998 ± 0.626
2.497AsnGlu: 2.497 ± 0.876
1.248AsnPhe: 1.248 ± 0.324
0.499AsnGly: 0.499 ± 0.283
1.248AsnHis: 1.248 ± 0.332
3.745AsnIle: 3.745 ± 1.228
4.245AsnLys: 4.245 ± 0.36
4.744AsnLeu: 4.744 ± 0.792
1.748AsnMet: 1.748 ± 0.593
1.498AsnAsn: 1.498 ± 0.444
1.998AsnPro: 1.998 ± 0.658
1.748AsnGln: 1.748 ± 0.366
1.248AsnArg: 1.248 ± 0.357
2.497AsnSer: 2.497 ± 0.585
3.496AsnThr: 3.496 ± 0.88
3.496AsnVal: 3.496 ± 1.315
0.25AsnTrp: 0.25 ± 0.157
1.498AsnTyr: 1.498 ± 0.51
0.0AsnXaa: 0.0 ± 0.0
Pro
2.497ProAla: 2.497 ± 1.085
0.499ProCys: 0.499 ± 0.597
3.246ProAsp: 3.246 ± 0.556
2.747ProGlu: 2.747 ± 0.48
0.749ProPhe: 0.749 ± 0.35
1.498ProGly: 1.498 ± 0.556
0.499ProHis: 0.499 ± 0.473
5.493ProIle: 5.493 ± 1.526
1.248ProLys: 1.248 ± 0.419
3.995ProLeu: 3.995 ± 0.762
1.748ProMet: 1.748 ± 0.921
2.497ProAsn: 2.497 ± 0.427
0.999ProPro: 0.999 ± 0.375
1.498ProGln: 1.498 ± 0.693
0.999ProArg: 0.999 ± 0.479
4.245ProSer: 4.245 ± 0.995
1.498ProThr: 1.498 ± 0.961
1.748ProVal: 1.748 ± 0.572
0.749ProTrp: 0.749 ± 0.273
3.246ProTyr: 3.246 ± 1.075
0.0ProXaa: 0.0 ± 0.0
Gln
1.248GlnAla: 1.248 ± 0.521
0.25GlnCys: 0.25 ± 0.299
2.497GlnAsp: 2.497 ± 1.144
1.498GlnGlu: 1.498 ± 0.508
0.25GlnPhe: 0.25 ± 0.157
1.998GlnGly: 1.998 ± 0.952
0.999GlnHis: 0.999 ± 0.434
3.745GlnIle: 3.745 ± 0.847
2.747GlnLys: 2.747 ± 0.653
3.745GlnLeu: 3.745 ± 0.961
0.749GlnMet: 0.749 ± 0.362
1.498GlnAsn: 1.498 ± 0.554
1.498GlnPro: 1.498 ± 0.88
0.25GlnGln: 0.25 ± 0.157
0.749GlnArg: 0.749 ± 0.443
1.748GlnSer: 1.748 ± 0.748
1.998GlnThr: 1.998 ± 1.086
2.996GlnVal: 2.996 ± 1.031
0.749GlnTrp: 0.749 ± 0.529
1.498GlnTyr: 1.498 ± 0.428
0.0GlnXaa: 0.0 ± 0.0
Arg
1.998ArgAla: 1.998 ± 0.954
0.999ArgCys: 0.999 ± 0.626
2.497ArgAsp: 2.497 ± 0.489
3.995ArgGlu: 3.995 ± 0.71
1.498ArgPhe: 1.498 ± 0.764
2.497ArgGly: 2.497 ± 0.884
0.749ArgHis: 0.749 ± 1.004
2.996ArgIle: 2.996 ± 0.776
3.246ArgLys: 3.246 ± 1.251
3.496ArgLeu: 3.496 ± 1.103
0.999ArgMet: 0.999 ± 0.571
0.999ArgAsn: 0.999 ± 0.42
1.248ArgPro: 1.248 ± 0.544
0.999ArgGln: 0.999 ± 0.388
2.996ArgArg: 2.996 ± 0.541
6.742ArgSer: 6.742 ± 0.894
3.496ArgThr: 3.496 ± 1.103
3.745ArgVal: 3.745 ± 0.439
0.25ArgTrp: 0.25 ± 0.157
3.246ArgTyr: 3.246 ± 1.162
0.0ArgXaa: 0.0 ± 0.0
Ser
3.745SerAla: 3.745 ± 0.685
1.498SerCys: 1.498 ± 0.547
5.743SerAsp: 5.743 ± 1.811
2.996SerGlu: 2.996 ± 0.741
3.995SerPhe: 3.995 ± 1.021
5.243SerGly: 5.243 ± 1.04
1.498SerHis: 1.498 ± 0.49
5.493SerIle: 5.493 ± 0.983
3.995SerLys: 3.995 ± 1.036
8.24SerLeu: 8.24 ± 0.875
2.747SerMet: 2.747 ± 0.703
4.494SerAsn: 4.494 ± 1.395
2.996SerPro: 2.996 ± 0.782
3.995SerGln: 3.995 ± 1.226
3.246SerArg: 3.246 ± 0.698
7.241SerSer: 7.241 ± 1.926
5.993SerThr: 5.993 ± 1.106
5.493SerVal: 5.493 ± 0.823
2.747SerTrp: 2.747 ± 0.791
3.246SerTyr: 3.246 ± 0.512
0.0SerXaa: 0.0 ± 0.0
Thr
3.496ThrAla: 3.496 ± 0.808
1.748ThrCys: 1.748 ± 0.759
2.747ThrAsp: 2.747 ± 0.506
4.744ThrGlu: 4.744 ± 0.97
2.996ThrPhe: 2.996 ± 0.787
3.246ThrGly: 3.246 ± 1.193
0.999ThrHis: 0.999 ± 0.352
5.493ThrIle: 5.493 ± 1.369
4.994ThrLys: 4.994 ± 1.82
7.99ThrLeu: 7.99 ± 1.763
1.748ThrMet: 1.748 ± 1.177
2.996ThrAsn: 2.996 ± 1.075
2.747ThrPro: 2.747 ± 1.191
1.748ThrGln: 1.748 ± 0.845
3.246ThrArg: 3.246 ± 1.362
4.994ThrSer: 4.994 ± 0.955
6.242ThrThr: 6.242 ± 1.213
3.246ThrVal: 3.246 ± 0.872
0.749ThrTrp: 0.749 ± 0.706
3.745ThrTyr: 3.745 ± 1.31
0.0ThrXaa: 0.0 ± 0.0
Val
1.998ValAla: 1.998 ± 1.099
0.499ValCys: 0.499 ± 0.313
2.247ValAsp: 2.247 ± 0.684
3.496ValGlu: 3.496 ± 1.213
3.496ValPhe: 3.496 ± 0.791
3.246ValGly: 3.246 ± 0.483
0.499ValHis: 0.499 ± 0.593
4.245ValIle: 4.245 ± 0.809
3.246ValLys: 3.246 ± 1.066
4.744ValLeu: 4.744 ± 1.792
1.748ValMet: 1.748 ± 0.796
2.247ValAsn: 2.247 ± 0.699
4.494ValPro: 4.494 ± 0.837
1.998ValGln: 1.998 ± 0.726
1.998ValArg: 1.998 ± 0.594
6.492ValSer: 6.492 ± 1.207
4.494ValThr: 4.494 ± 0.652
1.998ValVal: 1.998 ± 0.54
0.499ValTrp: 0.499 ± 0.24
1.748ValTyr: 1.748 ± 0.628
0.0ValXaa: 0.0 ± 0.0
Trp
1.248TrpAla: 1.248 ± 0.408
0.25TrpCys: 0.25 ± 0.299
1.248TrpAsp: 1.248 ± 0.332
0.749TrpGlu: 0.749 ± 0.387
0.25TrpPhe: 0.25 ± 0.526
1.248TrpGly: 1.248 ± 0.506
0.25TrpHis: 0.25 ± 0.157
0.999TrpIle: 0.999 ± 0.375
1.498TrpLys: 1.498 ± 0.503
0.999TrpLeu: 0.999 ± 0.375
0.0TrpMet: 0.0 ± 0.0
0.999TrpAsn: 0.999 ± 0.375
0.25TrpPro: 0.25 ± 0.157
0.499TrpGln: 0.499 ± 0.285
0.999TrpArg: 0.999 ± 0.281
0.499TrpSer: 0.499 ± 0.313
1.748TrpThr: 1.748 ± 0.552
0.749TrpVal: 0.749 ± 0.503
0.25TrpTrp: 0.25 ± 0.299
0.25TrpTyr: 0.25 ± 0.299
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.497TyrAla: 2.497 ± 1.199
0.0TyrCys: 0.0 ± 0.0
3.246TyrAsp: 3.246 ± 0.742
1.998TyrGlu: 1.998 ± 0.551
2.996TyrPhe: 2.996 ± 0.617
2.497TyrGly: 2.497 ± 0.659
1.748TyrHis: 1.748 ± 0.528
2.497TyrIle: 2.497 ± 1.384
1.248TyrLys: 1.248 ± 0.382
3.496TyrLeu: 3.496 ± 0.81
0.749TyrMet: 0.749 ± 0.362
1.498TyrAsn: 1.498 ± 0.577
2.497TyrPro: 2.497 ± 0.77
1.498TyrGln: 1.498 ± 0.816
2.747TyrArg: 2.747 ± 0.68
3.995TyrSer: 3.995 ± 0.945
1.498TyrThr: 1.498 ± 0.503
3.745TyrVal: 3.745 ± 0.665
0.749TyrTrp: 0.749 ± 0.519
2.247TyrTyr: 2.247 ± 1.054
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (4006 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski