Bauldia litoralis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Kaistiaceae; Bauldia

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4760 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G6AVP0|A0A1G6AVP0_9RHIZ ATP-dependent Clp protease adapter protein ClpS OS=Bauldia litoralis OX=665467 GN=clpS PE=3 SV=1
MM1 pKa = 7.99IIRR4 pKa = 11.84FCAALLAAASLSGCFTSDD22 pKa = 3.35APLIDD27 pKa = 4.24PEE29 pKa = 4.0EE30 pKa = 3.91AAFPFEE36 pKa = 4.31TIVYY40 pKa = 8.92QGEE43 pKa = 4.26GRR45 pKa = 11.84DD46 pKa = 3.75EE47 pKa = 4.2VQTLIRR53 pKa = 11.84KK54 pKa = 8.69GDD56 pKa = 3.56AYY58 pKa = 11.04VVEE61 pKa = 4.45PADD64 pKa = 2.86IEE66 pKa = 4.16MRR68 pKa = 11.84VRR70 pKa = 11.84FLAVGDD76 pKa = 3.84DD77 pKa = 4.0TYY79 pKa = 11.89VALAEE84 pKa = 4.67GSDD87 pKa = 3.74GDD89 pKa = 4.12EE90 pKa = 4.03TAVLYY95 pKa = 9.49TFLKK99 pKa = 10.36VDD101 pKa = 4.56LAAMTAEE108 pKa = 4.95SFASMAPEE116 pKa = 4.89DD117 pKa = 4.88GIDD120 pKa = 3.31RR121 pKa = 11.84PGFSDD126 pKa = 3.49CGDD129 pKa = 3.55RR130 pKa = 11.84GTCVDD135 pKa = 5.52DD136 pKa = 3.95LDD138 pKa = 6.04AYY140 pKa = 9.66IAYY143 pKa = 9.59AQARR147 pKa = 11.84VAAGDD152 pKa = 4.0LPDD155 pKa = 3.44IVYY158 pKa = 9.14TIISAEE164 pKa = 3.81

Molecular weight: 17.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G6E6I8|A0A1G6E6I8_9RHIZ Asp/Glu/Hydantoin racemase OS=Bauldia litoralis OX=665467 GN=SAMN02982931_04197 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.84LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATTGGRR28 pKa = 11.84KK29 pKa = 9.29VIAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4760

0

4760

1523614

39

2283

320.1

34.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.752 ± 0.05

0.752 ± 0.01

6.331 ± 0.032

5.667 ± 0.031

3.825 ± 0.023

9.029 ± 0.042

1.889 ± 0.014

5.489 ± 0.025

2.906 ± 0.026

9.623 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.385 ± 0.016

2.491 ± 0.017

5.258 ± 0.027

2.581 ± 0.016

6.951 ± 0.042

5.176 ± 0.023

5.49 ± 0.02

7.866 ± 0.028

1.327 ± 0.014

2.212 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski