Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa)

Taxonomy: cellular organisms; Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus

Average proteome isoelectric point is 7.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9598 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R7QPH3|R7QPH3_CHOCR Symplekin-like OS=Chondrus crispus OX=2769 GN=CHC_T00010348001 PE=4 SV=1
MM1 pKa = 7.47EE2 pKa = 4.63WNEE5 pKa = 3.9LVEE8 pKa = 4.99GSDD11 pKa = 4.77LEE13 pKa = 5.28ADD15 pKa = 4.34GYY17 pKa = 6.96TTFIEE22 pKa = 4.48VQVNRR27 pKa = 11.84TLAPAVSLIAPTGPFGTQGTDD48 pKa = 3.13QVVVYY53 pKa = 9.55IDD55 pKa = 3.6NVAEE59 pKa = 4.57GEE61 pKa = 4.21DD62 pKa = 5.18DD63 pKa = 3.9PTSWTYY69 pKa = 11.48DD70 pKa = 3.45LSILFADD77 pKa = 4.85GAKK80 pKa = 10.12SATVDD85 pKa = 3.74TPAVTQFGNGTISVAFTLPAGSGVDD110 pKa = 4.05LPWNLTITKK119 pKa = 9.27PDD121 pKa = 3.45AQVVPVVDD129 pKa = 3.48ATNPSFLFSFVSQLSVIDD147 pKa = 3.97IQPSSGPEE155 pKa = 3.5EE156 pKa = 4.4GGITVSLIGTFPGFDD171 pKa = 3.37TEE173 pKa = 4.64AVDD176 pKa = 5.1VLFDD180 pKa = 4.13GNPINPEE187 pKa = 4.72LITVIGPEE195 pKa = 4.47NITFTLPPKK204 pKa = 10.46VSIGTEE210 pKa = 3.48FDD212 pKa = 3.74VNVTVSIGAQVTSGITFSYY231 pKa = 9.98IPSILLQSLTPASGPVEE248 pKa = 4.57GGTQVTLVGQFIDD261 pKa = 3.95FTSDD265 pKa = 2.57IDD267 pKa = 3.67GTGIYY272 pKa = 10.35FGGEE276 pKa = 4.19KK277 pKa = 9.17IDD279 pKa = 3.95SDD281 pKa = 5.7LITASNSSVIVFTTPPQSFFASEE304 pKa = 3.8SVYY307 pKa = 10.64AYY309 pKa = 10.22DD310 pKa = 3.69VSVHH314 pKa = 6.13IGNSSSNSIVFSYY327 pKa = 10.35DD328 pKa = 2.74APLQITSIAPNSGTEE343 pKa = 3.91EE344 pKa = 4.41GGTDD348 pKa = 2.92ITLGGTFQAFDD359 pKa = 3.92LSNSNVYY366 pKa = 10.11IGSTKK371 pKa = 9.54IDD373 pKa = 3.23SSTIVHH379 pKa = 6.75NSTSILFITPPRR391 pKa = 11.84EE392 pKa = 3.97EE393 pKa = 4.02VGNGYY398 pKa = 7.91TYY400 pKa = 10.52NIWITIEE407 pKa = 4.25TTSSNGTSTTITSNTVTFTYY427 pKa = 10.47EE428 pKa = 3.96DD429 pKa = 3.26VGSQVSIDD437 pKa = 3.49ASGGSFNSDD446 pKa = 2.04GHH448 pKa = 6.85YY449 pKa = 10.89EE450 pKa = 4.08LGQCVEE456 pKa = 4.51SLYY459 pKa = 10.35QASISRR465 pKa = 11.84GARR468 pKa = 11.84LQNASYY474 pKa = 10.35RR475 pKa = 11.84WSLVANDD482 pKa = 4.3TEE484 pKa = 4.4TDD486 pKa = 3.13ILSAKK491 pKa = 10.46GIVTNSDD498 pKa = 3.58VLLLPYY504 pKa = 10.0TVFSEE509 pKa = 4.24EE510 pKa = 3.62NAAYY514 pKa = 9.0TLTLTVDD521 pKa = 3.12TDD523 pKa = 4.12FFSFTKK529 pKa = 10.36TLVLTQLSSQNIGVRR544 pKa = 11.84IKK546 pKa = 10.57NPRR549 pKa = 11.84PRR551 pKa = 11.84SISGPNTTLTIPADD565 pKa = 4.15LYY567 pKa = 11.67LPGCQGNVIIVNSTEE582 pKa = 3.81MTYY585 pKa = 10.11EE586 pKa = 3.67WVFRR590 pKa = 11.84GEE592 pKa = 4.48TYY594 pKa = 10.9VFSHH598 pKa = 5.93QNEE601 pKa = 4.5SAPEE605 pKa = 3.94EE606 pKa = 4.18QASPTLLGRR615 pKa = 11.84EE616 pKa = 3.78FHH618 pKa = 6.74IPQAVMEE625 pKa = 4.38YY626 pKa = 10.25GSFGISLTAYY636 pKa = 8.23FTDD639 pKa = 3.49QPSIKK644 pKa = 10.63GIDD647 pKa = 3.4TSTVVINPAALISQINGGEE666 pKa = 3.83ASQLISEE673 pKa = 4.45TGKK676 pKa = 10.13FHH678 pKa = 6.94SLWFTIPRR686 pKa = 11.84SS687 pKa = 3.52

Molecular weight: 73.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R7Q251|R7Q251_CHOCR Uncharacterized protein OS=Chondrus crispus OX=2769 GN=CHC_T00001368001 PE=4 SV=1
MM1 pKa = 7.47TKK3 pKa = 9.12GTNRR7 pKa = 11.84KK8 pKa = 9.3KK9 pKa = 9.82IRR11 pKa = 11.84KK12 pKa = 8.2AGFRR16 pKa = 11.84ARR18 pKa = 11.84MKK20 pKa = 8.98TVSGRR25 pKa = 11.84RR26 pKa = 11.84IIKK29 pKa = 9.51ARR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84KK34 pKa = 8.44KK35 pKa = 10.03RR36 pKa = 11.84KK37 pKa = 9.82RR38 pKa = 11.84IGLL41 pKa = 3.8

Molecular weight: 4.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9598

0

9598

3411166

10

5324

355.4

39.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.083 ± 0.027

1.749 ± 0.015

5.399 ± 0.022

6.123 ± 0.033

3.618 ± 0.019

6.788 ± 0.028

2.531 ± 0.015

4.332 ± 0.02

4.763 ± 0.024

8.995 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.328 ± 0.011

3.295 ± 0.017

5.519 ± 0.04

3.446 ± 0.02

7.486 ± 0.026

8.141 ± 0.034

5.424 ± 0.019

7.021 ± 0.022

1.171 ± 0.009

2.315 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski