Devosia crocina

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3590 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I7ND35|A0A1I7ND35_9RHIZ NADH-quinone oxidoreductase subunit N OS=Devosia crocina OX=429728 GN=nuoN PE=3 SV=1
MM1 pKa = 7.34FVRR4 pKa = 11.84SLSLGVAAAALMVGGAQAADD24 pKa = 4.78LIIPTTPQPIYY35 pKa = 10.56EE36 pKa = 4.27SAGFDD41 pKa = 3.62WEE43 pKa = 4.15GLYY46 pKa = 10.9AGVRR50 pKa = 11.84IGGQWVGEE58 pKa = 3.88QSYY61 pKa = 11.4GNIGFGDD68 pKa = 5.52DD69 pKa = 3.08ITQGVIGGAVGVNFIPVDD87 pKa = 3.64PFLLGLEE94 pKa = 4.28VTGDD98 pKa = 4.04YY99 pKa = 11.2VWGNDD104 pKa = 3.18LATGEE109 pKa = 4.31FFANLRR115 pKa = 11.84AGAVVTDD122 pKa = 3.89SVLVYY127 pKa = 10.78ALGGVGVQTGPEE139 pKa = 4.38GTSGTEE145 pKa = 3.61GLYY148 pKa = 10.24QLGGGVEE155 pKa = 4.3FAVTDD160 pKa = 5.21AITVRR165 pKa = 11.84GEE167 pKa = 3.73IVGQGDD173 pKa = 3.54FADD176 pKa = 4.01NGNDD180 pKa = 3.56FFNTAKK186 pKa = 9.86ATVGVFYY193 pKa = 10.88HH194 pKa = 6.45FF195 pKa = 4.46

Molecular weight: 20.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I7NNJ9|A0A1I7NNJ9_9RHIZ Regulator of nucleoside diphosphate kinase OS=Devosia crocina OX=429728 GN=SAMN05216456_2390 PE=4 SV=1
MM1 pKa = 7.43LRR3 pKa = 11.84QRR5 pKa = 11.84TLSSQPHH12 pKa = 5.43RR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84HH18 pKa = 5.25HH19 pKa = 7.02RR20 pKa = 11.84IFMSAAVSPIEE31 pKa = 3.91SRR33 pKa = 11.84ANLGIALVLTSQIVLLMLDD52 pKa = 4.79ISAKK56 pKa = 7.63WLSVEE61 pKa = 4.36GMPTTEE67 pKa = 3.71IVFVRR72 pKa = 11.84YY73 pKa = 9.66GMHH76 pKa = 7.44LALLLLLFLPVSGARR91 pKa = 11.84LFQTGNLKK99 pKa = 10.91LEE101 pKa = 4.35ILRR104 pKa = 11.84GACLLITTGLNFLAMKK120 pKa = 8.72FLPLTVTAAIQFTSPLIICALSGPLLGDD148 pKa = 3.3KK149 pKa = 10.66VGWRR153 pKa = 11.84RR154 pKa = 11.84WLAIGCGFVGILIIVRR170 pKa = 11.84PGSEE174 pKa = 3.97AFQPAAFLSLACAFFLALFSILTRR198 pKa = 11.84KK199 pKa = 9.27LAGVDD204 pKa = 3.56SAQTQQFFAGATPVILLLPVAFTDD228 pKa = 4.02WVWPSQPISWVAFFVMGAAGLGGHH252 pKa = 6.62FLNSVAHH259 pKa = 6.9RR260 pKa = 11.84FATPATLAPFSYY272 pKa = 10.68LSLVYY277 pKa = 10.27LSIASWLIFNEE288 pKa = 4.78PPDD291 pKa = 3.31EE292 pKa = 4.07WFILGVGIIISSGLYY307 pKa = 7.67IWLRR311 pKa = 11.84EE312 pKa = 4.09RR313 pKa = 11.84QLSRR317 pKa = 11.84PVTGEE322 pKa = 3.66VNLRR326 pKa = 3.52

Molecular weight: 35.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3590

0

3590

1108822

32

2668

308.9

33.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.208 ± 0.056

0.666 ± 0.012

5.7 ± 0.035

5.882 ± 0.04

3.865 ± 0.03

8.511 ± 0.038

2.008 ± 0.02

5.443 ± 0.03

3.021 ± 0.03

10.287 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.532 ± 0.018

2.774 ± 0.023

5.034 ± 0.03

3.32 ± 0.025

6.619 ± 0.039

5.591 ± 0.029

5.467 ± 0.025

7.537 ± 0.037

1.305 ± 0.018

2.23 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski