Devosia sp. DBB001

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; unclassified Devosia

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4502 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A024K8I7|A0A024K8I7_9RHIZ CblY a non-orthologous displasment for Alpha-rib azole-5'-phosphate phosphatase OS=Devosia sp. DBB001 OX=1380412 PE=4 SV=1
MM1 pKa = 8.02AIGRR5 pKa = 11.84LLLNSRR11 pKa = 11.84LGFALIGALLCSPFISIEE29 pKa = 3.63PAYY32 pKa = 10.74ADD34 pKa = 4.18LRR36 pKa = 11.84VCNEE40 pKa = 3.77TGNQVSIALGYY51 pKa = 9.19RR52 pKa = 11.84AEE54 pKa = 4.78RR55 pKa = 11.84GWQSEE60 pKa = 4.61GWWVATPQQCAVVYY74 pKa = 10.65QGDD77 pKa = 4.02LNSRR81 pKa = 11.84FYY83 pKa = 11.29YY84 pKa = 10.45LYY86 pKa = 10.6VADD89 pKa = 5.84DD90 pKa = 3.61IGGGAWDD97 pKa = 4.22GSVYY101 pKa = 9.99MCTRR105 pKa = 11.84DD106 pKa = 3.19EE107 pKa = 4.38SFTIFGVEE115 pKa = 3.75DD116 pKa = 3.75CLARR120 pKa = 11.84GYY122 pKa = 10.83EE123 pKa = 3.73RR124 pKa = 11.84TGFFEE129 pKa = 4.99VDD131 pKa = 3.17TQNRR135 pKa = 11.84TDD137 pKa = 2.99WTLQLTEE144 pKa = 4.43NRR146 pKa = 11.84DD147 pKa = 4.22AIPEE151 pKa = 4.23GDD153 pKa = 4.12DD154 pKa = 3.41ATGEE158 pKa = 4.11PLGDD162 pKa = 3.63EE163 pKa = 4.51TGGVPPDD170 pKa = 3.84QQDD173 pKa = 3.55PPPPDD178 pKa = 3.44EE179 pKa = 4.27TTPAPEE185 pKa = 4.6GPAAIQGSDD194 pKa = 2.77

Molecular weight: 21.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A024KHT6|A0A024KHT6_9RHIZ Putative diheme cytochrome c-553 OS=Devosia sp. DBB001 OX=1380412 PE=4 SV=1
MM1 pKa = 7.43RR2 pKa = 11.84CARR5 pKa = 11.84RR6 pKa = 11.84ATDD9 pKa = 3.25RR10 pKa = 11.84TSRR13 pKa = 11.84ATRR16 pKa = 11.84RR17 pKa = 11.84GVRR20 pKa = 11.84TTRR23 pKa = 11.84RR24 pKa = 11.84TGRR27 pKa = 11.84IIHH30 pKa = 6.34RR31 pKa = 11.84AARR34 pKa = 11.84AAPWAHH40 pKa = 4.59TTSRR44 pKa = 11.84AAHH47 pKa = 5.3TARR50 pKa = 11.84RR51 pKa = 11.84ARR53 pKa = 11.84TTSRR57 pKa = 11.84TTRR60 pKa = 11.84ATHH63 pKa = 6.68RR64 pKa = 11.84ARR66 pKa = 11.84HH67 pKa = 4.56ICRR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84NAACLCGRR80 pKa = 11.84AGIGSRR86 pKa = 11.84LL87 pKa = 3.42

Molecular weight: 9.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4502

0

4502

1360218

37

2687

302.1

32.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.292 ± 0.046

0.657 ± 0.011

5.679 ± 0.03

5.715 ± 0.038

3.855 ± 0.027

8.567 ± 0.034

1.918 ± 0.016

5.453 ± 0.026

3.326 ± 0.031

10.158 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.455 ± 0.016

2.865 ± 0.025

5.14 ± 0.029

3.167 ± 0.021

6.547 ± 0.041

5.399 ± 0.026

5.459 ± 0.033

7.668 ± 0.029

1.344 ± 0.017

2.335 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski