Equid gammaherpesvirus 2 (Equine herpesvirus 2)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Percavirus

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 78 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A3F1B9|A3F1B9_9GAMA E6 OS=Equid gammaherpesvirus 2 OX=12657 GN=E6 PE=4 SV=1
MM1 pKa = 7.87RR2 pKa = 11.84GILLYY7 pKa = 10.17GCVWVFLMQFTSTLANQTTVATTTSTTVPATVSTTVPTTVPATVPTTVPATVPTTVPTTVPATVPTTVPTTVPTTVPATVPTTVPTTVPATVPTTVPTTVPATVPTTVTTTVTTTVTTTVTTTVPTTVPATSVASTTQAQTTSNQTTHH155 pKa = 5.61NTSNPTTTTGGEE167 pKa = 4.0NEE169 pKa = 4.26TTIFTSSPITTQNSTEE185 pKa = 4.26SEE187 pKa = 4.41VNATEE192 pKa = 4.34SASTTSTQTSSTPSDD207 pKa = 3.68LLTFITGNQEE217 pKa = 3.8TPEE220 pKa = 4.38PSDD223 pKa = 4.84DD224 pKa = 5.7FIDD227 pKa = 4.44LLPSNISSFFNGGLLLVAAFVLIMLLIVIWNICLCISTHH266 pKa = 5.25NQLKK270 pKa = 8.57NHH272 pKa = 6.86MYY274 pKa = 8.48QTVPP278 pKa = 3.17

Molecular weight: 28.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4Q5C5|A0A0B4Q5C5_9GAMA Envelope glycoprotein H OS=Equid gammaherpesvirus 2 OX=12657 GN=ORF22 PE=3 SV=1
MM1 pKa = 7.29FGVAKK6 pKa = 9.63PPPSPIPKK14 pKa = 7.77PTRR17 pKa = 11.84GRR19 pKa = 11.84HH20 pKa = 4.86FGEE23 pKa = 4.97KK24 pKa = 10.28YY25 pKa = 9.45PEE27 pKa = 4.25SVNFPSRR34 pKa = 11.84GARR37 pKa = 11.84QRR39 pKa = 11.84ASTRR43 pKa = 11.84HH44 pKa = 5.26RR45 pKa = 11.84PSIKK49 pKa = 10.18EE50 pKa = 3.69VWEE53 pKa = 4.43PPAPPGAGMIFWGEE67 pKa = 3.74NGEE70 pKa = 4.23NGDD73 pKa = 4.49FGQSAPSCYY82 pKa = 8.81EE83 pKa = 3.36RR84 pKa = 11.84RR85 pKa = 11.84RR86 pKa = 11.84ARR88 pKa = 11.84SPGGQGAEE96 pKa = 3.87NAAPVLRR103 pKa = 11.84PGPEE107 pKa = 3.31GRR109 pKa = 11.84RR110 pKa = 11.84RR111 pKa = 11.84RR112 pKa = 11.84EE113 pKa = 3.68SLILLEE119 pKa = 4.38GDD121 pKa = 3.66MVRR124 pKa = 11.84EE125 pKa = 4.31TATVAPWTVSPLRR138 pKa = 11.84PEE140 pKa = 4.12RR141 pKa = 11.84PKK143 pKa = 11.11SLLGRR148 pKa = 11.84FRR150 pKa = 11.84SKK152 pKa = 9.49LTVWRR157 pKa = 11.84EE158 pKa = 3.86VPRR161 pKa = 11.84TPGPVAPIPEE171 pKa = 4.6LPGEE175 pKa = 4.37ADD177 pKa = 4.15DD178 pKa = 5.14PPTRR182 pKa = 11.84TPPPPPDD189 pKa = 3.65DD190 pKa = 3.62

Molecular weight: 20.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

78

0

78

38132

89

3755

488.9

53.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.164 ± 0.388

2.337 ± 0.183

4.841 ± 0.189

6.202 ± 0.373

4.453 ± 0.22

7.804 ± 0.331

2.31 ± 0.118

3.805 ± 0.18

4.28 ± 0.196

9.714 ± 0.283

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.08 ± 0.133

3.422 ± 0.156

6.952 ± 0.773

3.574 ± 0.325

6.068 ± 0.254

7.385 ± 0.225

5.46 ± 0.267

6.947 ± 0.268

1.023 ± 0.071

3.178 ± 0.173
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski