Pedococcus dokdonensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Intrasporangiaceae; Pedococcus

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3628 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H0U0T5|A0A1H0U0T5_9MICO Probable membrane transporter protein OS=Pedococcus dokdonensis OX=443156 GN=SAMN04489867_3078 PE=3 SV=1
MM1 pKa = 7.81EE2 pKa = 5.16YY3 pKa = 10.83DD4 pKa = 3.72EE5 pKa = 5.93LMSALSDD12 pKa = 3.88DD13 pKa = 4.85RR14 pKa = 11.84ISDD17 pKa = 3.54FLVAMEE23 pKa = 5.04LSEE26 pKa = 5.85LDD28 pKa = 3.68LPHH31 pKa = 7.1IVLTRR36 pKa = 11.84GDD38 pKa = 3.7DD39 pKa = 3.92FGVVTYY45 pKa = 10.51SGPYY49 pKa = 8.83LHH51 pKa = 7.18AVDD54 pKa = 4.94ALTAAEE60 pKa = 4.15AQHH63 pKa = 6.95RR64 pKa = 11.84IQVNSGGGDD73 pKa = 3.47LTFHH77 pKa = 6.39VAALYY82 pKa = 10.26PDD84 pKa = 5.83DD85 pKa = 6.14DD86 pKa = 4.7LTDD89 pKa = 3.4TDD91 pKa = 3.73

Molecular weight: 9.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H0V078|A0A1H0V078_9MICO ATP-grasp domain-containing protein OS=Pedococcus dokdonensis OX=443156 GN=SAMN04489867_3589 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3628

0

3628

1185105

29

2292

326.7

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.435 ± 0.066

0.667 ± 0.011

6.34 ± 0.034

5.299 ± 0.04

2.739 ± 0.024

9.366 ± 0.034

2.212 ± 0.018

3.286 ± 0.031

2.132 ± 0.03

10.058 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.791 ± 0.018

1.753 ± 0.023

5.695 ± 0.031

2.907 ± 0.02

7.45 ± 0.041

5.564 ± 0.033

6.409 ± 0.048

9.449 ± 0.041

1.568 ± 0.017

1.881 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski