Zavarzinia compransoris

Taxonomy: cellular organisms; Bacteria; Proteobacteria;

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4405 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A317DT32|A0A317DT32_9PROT 2Fe-2S ferredoxin OS=Zavarzinia compransoris OX=1264899 GN=DKG75_22160 PE=4 SV=1
MM1 pKa = 7.3ATTAAAALSATGFVAAQDD19 pKa = 4.23AYY21 pKa = 9.82PVSGDD26 pKa = 3.12QFGYY30 pKa = 8.17GTRR33 pKa = 11.84AVAEE37 pKa = 4.1TSFNLEE43 pKa = 3.66IFGGADD49 pKa = 3.56EE50 pKa = 5.24NGGTYY55 pKa = 10.47GGAPSITIPLGDD67 pKa = 3.81KK68 pKa = 10.87LGLQVDD74 pKa = 5.01GVAGFTADD82 pKa = 3.19EE83 pKa = 4.48AGFAGGAAQLFYY95 pKa = 10.79RR96 pKa = 11.84DD97 pKa = 4.08PQQGLIGVAAGGYY110 pKa = 7.66YY111 pKa = 9.88VEE113 pKa = 5.82GIKK116 pKa = 10.3QYY118 pKa = 10.77SVAGIAEE125 pKa = 4.43YY126 pKa = 11.21YY127 pKa = 10.26LDD129 pKa = 4.83NITLEE134 pKa = 4.21GLVGYY139 pKa = 7.47QTGDD143 pKa = 3.16VMDD146 pKa = 3.94SVYY149 pKa = 11.03GRR151 pKa = 11.84LGVSIYY157 pKa = 11.14ANPNLRR163 pKa = 11.84LGGGVSYY170 pKa = 11.04SEE172 pKa = 4.05EE173 pKa = 4.09TKK175 pKa = 10.49IGGDD179 pKa = 3.4IQIEE183 pKa = 4.05ALLTDD188 pKa = 3.92VPGLALFATGAFDD201 pKa = 4.03EE202 pKa = 4.9YY203 pKa = 10.97GTMGYY208 pKa = 10.55GGVRR212 pKa = 11.84FYY214 pKa = 11.35FNSGTSLLSTDD225 pKa = 3.49RR226 pKa = 11.84TKK228 pKa = 10.72QAATPSLIDD237 pKa = 2.8MHH239 pKa = 7.11RR240 pKa = 11.84NLGRR244 pKa = 11.84PNFLTNGGAGFGLRR258 pKa = 11.84QISLVGAAKK267 pKa = 10.7NGGDD271 pKa = 4.05DD272 pKa = 4.29FGDD275 pKa = 3.63VTPPPPPPPPPPNPNANCGDD295 pKa = 3.73GLICGVQDD303 pKa = 3.51LVGNLTEE310 pKa = 4.19NTILSPLNDD319 pKa = 5.65LITGLLDD326 pKa = 4.14PNSGALSALTGALEE340 pKa = 4.82DD341 pKa = 4.04LTSSGGGALGAVTDD355 pKa = 4.47LVNGLVNTQNQALEE369 pKa = 4.11PVISGLNSILAQLTGGLTGGLTGGLTGSGATANDD403 pKa = 3.67GLIDD407 pKa = 3.77VVQGVVGNLLDD418 pKa = 3.9GTALEE423 pKa = 4.62GVGDD427 pKa = 4.09LVDD430 pKa = 4.7GLVDD434 pKa = 4.16PNTGALAGLTGALNDD449 pKa = 4.47LTSSDD454 pKa = 4.48AGPLGPVTDD463 pKa = 4.93LVNGLAGANVGALDD477 pKa = 3.75PVLDD481 pKa = 4.39GVHH484 pKa = 7.16DD485 pKa = 4.76LLAGLTGGLAGALPGASSGSTDD507 pKa = 3.01GGLIDD512 pKa = 4.1TVQGTVDD519 pKa = 3.71NLLHH523 pKa = 5.53GTPLEE528 pKa = 4.36VVSDD532 pKa = 3.92LVGGLVDD539 pKa = 4.13PQTGALSALTGQLNNLTAPNAPLGSLTGLVDD570 pKa = 3.99GLVGAQNGALDD581 pKa = 4.07PVLDD585 pKa = 4.17TVNGLLSNNLSSVNLGAAPVVLQNVLPSIPVVGDD619 pKa = 3.65LLSGLVGAIGGIGGG633 pKa = 3.66

Molecular weight: 62.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A317E066|A0A317E066_9PROT ATP-dependent Clp protease ATP-binding subunit ClpA OS=Zavarzinia compransoris OX=1264899 GN=clpA PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.23QPSALVRR12 pKa = 11.84KK13 pKa = 8.86RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.76GFRR19 pKa = 11.84SRR21 pKa = 11.84MSTVGGRR28 pKa = 11.84VVIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.91GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4405

0

4405

1447416

26

4933

328.6

35.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.236 ± 0.055

0.781 ± 0.012

5.78 ± 0.028

5.271 ± 0.036

3.636 ± 0.022

9.432 ± 0.051

1.964 ± 0.02

4.77 ± 0.021

2.713 ± 0.028

10.697 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.111 ± 0.016

2.244 ± 0.024

5.59 ± 0.035

2.741 ± 0.021

7.625 ± 0.042

4.404 ± 0.03

5.067 ± 0.041

7.509 ± 0.037

1.288 ± 0.015

2.142 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski