Amino acid dipepetide frequency for Botryosphaeria dothidea chrysovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.719AlaAla: 8.719 ± 1.134
1.503AlaCys: 1.503 ± 0.652
8.118AlaAsp: 8.118 ± 1.177
6.314AlaGlu: 6.314 ± 1.515
3.608AlaPhe: 3.608 ± 0.84
9.922AlaGly: 9.922 ± 2.279
2.706AlaHis: 2.706 ± 0.778
3.909AlaIle: 3.909 ± 0.98
5.412AlaLys: 5.412 ± 0.881
11.425AlaLeu: 11.425 ± 2.896
4.811AlaMet: 4.811 ± 1.169
2.405AlaAsn: 2.405 ± 0.286
5.111AlaPro: 5.111 ± 2.323
4.209AlaGln: 4.209 ± 0.365
7.817AlaArg: 7.817 ± 1.276
8.419AlaSer: 8.419 ± 0.945
8.719AlaThr: 8.719 ± 2.021
6.915AlaVal: 6.915 ± 0.726
1.203AlaTrp: 1.203 ± 0.118
3.007AlaTyr: 3.007 ± 0.826
0.0AlaXaa: 0.0 ± 0.0
Cys
1.804CysAla: 1.804 ± 0.515
0.902CysCys: 0.902 ± 0.494
1.203CysAsp: 1.203 ± 0.538
1.203CysGlu: 1.203 ± 0.445
0.0CysPhe: 0.0 ± 0.0
1.203CysGly: 1.203 ± 0.452
1.203CysHis: 1.203 ± 0.363
0.601CysIle: 0.601 ± 0.357
0.301CysLys: 0.301 ± 0.23
1.203CysLeu: 1.203 ± 0.491
0.0CysMet: 0.0 ± 0.0
0.301CysAsn: 0.301 ± 0.23
0.0CysPro: 0.0 ± 0.0
0.601CysGln: 0.601 ± 0.357
1.203CysArg: 1.203 ± 0.118
0.902CysSer: 0.902 ± 0.494
0.601CysThr: 0.601 ± 0.562
1.203CysVal: 1.203 ± 0.452
0.301CysTrp: 0.301 ± 0.28
0.301CysTyr: 0.301 ± 0.281
0.0CysXaa: 0.0 ± 0.0
Asp
4.51AspAla: 4.51 ± 1.034
0.601AspCys: 0.601 ± 0.263
1.804AspAsp: 1.804 ± 0.988
3.909AspGlu: 3.909 ± 0.126
1.203AspPhe: 1.203 ± 0.46
3.307AspGly: 3.307 ± 0.278
1.804AspHis: 1.804 ± 0.732
0.902AspIle: 0.902 ± 0.689
0.301AspLys: 0.301 ± 0.23
5.111AspLeu: 5.111 ± 0.874
1.503AspMet: 1.503 ± 0.541
2.105AspAsn: 2.105 ± 0.998
4.811AspPro: 4.811 ± 1.643
2.405AspGln: 2.405 ± 0.258
2.706AspArg: 2.706 ± 0.848
2.405AspSer: 2.405 ± 0.258
3.307AspThr: 3.307 ± 0.749
5.713AspVal: 5.713 ± 1.509
1.203AspTrp: 1.203 ± 0.628
3.608AspTyr: 3.608 ± 0.399
0.301AspXaa: 0.301 ± 0.281
Glu
6.013GluAla: 6.013 ± 1.402
0.301GluCys: 0.301 ± 0.297
4.51GluAsp: 4.51 ± 1.939
2.105GluGlu: 2.105 ± 0.344
1.503GluPhe: 1.503 ± 1.148
1.804GluGly: 1.804 ± 0.558
2.405GluHis: 2.405 ± 0.65
2.405GluIle: 2.405 ± 0.556
1.503GluLys: 1.503 ± 0.645
7.216GluLeu: 7.216 ± 1.041
2.706GluMet: 2.706 ± 0.729
1.203GluAsn: 1.203 ± 0.491
4.209GluPro: 4.209 ± 1.123
2.105GluGln: 2.105 ± 0.306
4.811GluArg: 4.811 ± 1.077
3.007GluSer: 3.007 ± 0.515
2.706GluThr: 2.706 ± 1.018
3.909GluVal: 3.909 ± 0.718
0.902GluTrp: 0.902 ± 0.455
0.601GluTyr: 0.601 ± 0.562
0.0GluXaa: 0.0 ± 0.0
Phe
3.909PheAla: 3.909 ± 0.371
0.0PheCys: 0.0 ± 0.0
1.804PheAsp: 1.804 ± 0.277
2.405PheGlu: 2.405 ± 1.149
1.804PhePhe: 1.804 ± 0.708
1.503PheGly: 1.503 ± 0.356
0.301PheHis: 0.301 ± 0.23
0.601PheIle: 0.601 ± 0.362
1.203PheLys: 1.203 ± 0.628
3.007PheLeu: 3.007 ± 0.302
0.601PheMet: 0.601 ± 0.459
0.902PheAsn: 0.902 ± 0.455
1.203PhePro: 1.203 ± 0.656
0.301PheGln: 0.301 ± 0.23
0.601PheArg: 0.601 ± 0.263
0.601PheSer: 0.601 ± 0.562
3.307PheThr: 3.307 ± 0.455
2.706PheVal: 2.706 ± 0.737
0.902PheTrp: 0.902 ± 0.455
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
8.419GlyAla: 8.419 ± 2.176
1.503GlyCys: 1.503 ± 0.708
3.007GlyAsp: 3.007 ± 0.928
4.209GlyGlu: 4.209 ± 0.688
1.804GlyPhe: 1.804 ± 0.243
5.111GlyGly: 5.111 ± 0.93
2.105GlyHis: 2.105 ± 0.902
2.105GlyIle: 2.105 ± 0.656
1.503GlyLys: 1.503 ± 0.541
9.621GlyLeu: 9.621 ± 1.11
1.203GlyMet: 1.203 ± 0.325
1.804GlyAsn: 1.804 ± 0.645
3.909GlyPro: 3.909 ± 0.477
3.608GlyGln: 3.608 ± 1.398
5.111GlyArg: 5.111 ± 0.488
6.915GlySer: 6.915 ± 1.133
4.811GlyThr: 4.811 ± 1.033
6.314GlyVal: 6.314 ± 2.372
0.902GlyTrp: 0.902 ± 0.256
2.105GlyTyr: 2.105 ± 0.513
0.0GlyXaa: 0.0 ± 0.0
His
3.007HisAla: 3.007 ± 1.072
0.301HisCys: 0.301 ± 0.281
0.601HisAsp: 0.601 ± 0.459
2.105HisGlu: 2.105 ± 0.538
0.601HisPhe: 0.601 ± 0.327
2.706HisGly: 2.706 ± 0.753
0.902HisHis: 0.902 ± 0.542
0.902HisIle: 0.902 ± 0.406
0.601HisLys: 0.601 ± 0.362
3.007HisLeu: 3.007 ± 0.725
1.203HisMet: 1.203 ± 0.491
1.203HisAsn: 1.203 ± 0.605
1.804HisPro: 1.804 ± 0.342
1.203HisGln: 1.203 ± 0.445
1.503HisArg: 1.503 ± 0.701
1.804HisSer: 1.804 ± 0.555
0.601HisThr: 0.601 ± 0.3
2.105HisVal: 2.105 ± 0.634
0.301HisTrp: 0.301 ± 0.23
0.902HisTyr: 0.902 ± 0.455
0.0HisXaa: 0.0 ± 0.0
Ile
2.405IleAla: 2.405 ± 0.623
0.601IleCys: 0.601 ± 0.459
1.804IleAsp: 1.804 ± 0.857
2.405IleGlu: 2.405 ± 1.51
1.203IlePhe: 1.203 ± 0.628
2.706IleGly: 2.706 ± 0.795
1.503IleHis: 1.503 ± 0.701
0.601IleIle: 0.601 ± 0.327
1.503IleLys: 1.503 ± 0.539
1.804IleLeu: 1.804 ± 1.062
0.902IleMet: 0.902 ± 0.406
0.902IleAsn: 0.902 ± 0.347
0.902IlePro: 0.902 ± 0.277
0.902IleGln: 0.902 ± 0.494
1.804IleArg: 1.804 ± 0.747
1.503IleSer: 1.503 ± 0.113
1.203IleThr: 1.203 ± 0.54
2.405IleVal: 2.405 ± 0.838
0.0IleTrp: 0.0 ± 0.0
1.203IleTyr: 1.203 ± 0.491
0.0IleXaa: 0.0 ± 0.0
Lys
3.909LysAla: 3.909 ± 0.619
0.301LysCys: 0.301 ± 0.281
0.601LysAsp: 0.601 ± 0.291
2.105LysGlu: 2.105 ± 0.673
0.902LysPhe: 0.902 ± 0.406
1.503LysGly: 1.503 ± 1.033
1.804LysHis: 1.804 ± 0.751
0.601LysIle: 0.601 ± 0.3
0.601LysLys: 0.601 ± 0.3
2.405LysLeu: 2.405 ± 0.942
0.601LysMet: 0.601 ± 0.263
0.902LysAsn: 0.902 ± 0.494
1.203LysPro: 1.203 ± 0.118
1.804LysGln: 1.804 ± 0.813
2.706LysArg: 2.706 ± 0.495
3.608LysSer: 3.608 ± 0.26
0.601LysThr: 0.601 ± 0.357
2.105LysVal: 2.105 ± 0.572
0.601LysTrp: 0.601 ± 0.291
0.301LysTyr: 0.301 ± 0.23
0.0LysXaa: 0.0 ± 0.0
Leu
14.432LeuAla: 14.432 ± 2.413
2.105LeuCys: 2.105 ± 0.567
6.314LeuAsp: 6.314 ± 0.558
5.111LeuGlu: 5.111 ± 0.748
2.105LeuPhe: 2.105 ± 0.318
9.321LeuGly: 9.321 ± 0.953
2.706LeuHis: 2.706 ± 1.935
2.706LeuIle: 2.706 ± 1.137
2.105LeuLys: 2.105 ± 0.718
8.118LeuLeu: 8.118 ± 1.602
2.105LeuMet: 2.105 ± 0.712
3.608LeuAsn: 3.608 ± 0.81
6.615LeuPro: 6.615 ± 1.18
4.209LeuGln: 4.209 ± 1.092
9.922LeuArg: 9.922 ± 1.749
8.419LeuSer: 8.419 ± 1.887
4.51LeuThr: 4.51 ± 0.691
4.811LeuVal: 4.811 ± 0.659
0.0LeuTrp: 0.0 ± 0.0
3.307LeuTyr: 3.307 ± 0.712
0.0LeuXaa: 0.0 ± 0.0
Met
5.412MetAla: 5.412 ± 0.934
0.601MetCys: 0.601 ± 0.459
0.601MetAsp: 0.601 ± 0.263
0.301MetGlu: 0.301 ± 0.23
0.0MetPhe: 0.0 ± 0.0
2.105MetGly: 2.105 ± 0.744
0.301MetHis: 0.301 ± 0.297
0.301MetIle: 0.301 ± 0.23
0.0MetLys: 0.0 ± 0.0
3.909MetLeu: 3.909 ± 0.305
0.301MetMet: 0.301 ± 0.281
0.301MetAsn: 0.301 ± 0.281
0.902MetPro: 0.902 ± 0.406
1.503MetGln: 1.503 ± 0.356
2.405MetArg: 2.405 ± 0.726
3.307MetSer: 3.307 ± 0.972
2.105MetThr: 2.105 ± 0.673
1.503MetVal: 1.503 ± 0.701
0.601MetTrp: 0.601 ± 0.291
0.902MetTyr: 0.902 ± 0.277
0.0MetXaa: 0.0 ± 0.0
Asn
2.706AsnAla: 2.706 ± 1.552
0.0AsnCys: 0.0 ± 0.0
1.503AsnAsp: 1.503 ± 0.345
1.203AsnGlu: 1.203 ± 0.352
1.203AsnPhe: 1.203 ± 0.824
2.405AsnGly: 2.405 ± 1.201
0.902AsnHis: 0.902 ± 0.251
0.902AsnIle: 0.902 ± 0.406
0.301AsnLys: 0.301 ± 0.23
1.804AsnLeu: 1.804 ± 0.415
0.301AsnMet: 0.301 ± 0.281
0.301AsnAsn: 0.301 ± 0.23
1.503AsnPro: 1.503 ± 0.788
1.203AsnGln: 1.203 ± 0.797
3.307AsnArg: 3.307 ± 1.174
3.307AsnSer: 3.307 ± 0.711
1.203AsnThr: 1.203 ± 0.118
2.405AsnVal: 2.405 ± 0.544
1.203AsnTrp: 1.203 ± 0.759
1.503AsnTyr: 1.503 ± 0.701
0.0AsnXaa: 0.0 ± 0.0
Pro
8.118ProAla: 8.118 ± 2.746
0.601ProCys: 0.601 ± 0.263
3.909ProAsp: 3.909 ± 0.854
3.007ProGlu: 3.007 ± 0.932
0.902ProPhe: 0.902 ± 0.277
3.909ProGly: 3.909 ± 0.619
1.203ProHis: 1.203 ± 0.601
0.902ProIle: 0.902 ± 0.256
1.503ProLys: 1.503 ± 0.737
3.007ProLeu: 3.007 ± 0.287
2.105ProMet: 2.105 ± 1.183
2.706ProAsn: 2.706 ± 0.022
4.209ProPro: 4.209 ± 2.538
0.601ProGln: 0.601 ± 0.594
2.405ProArg: 2.405 ± 1.491
3.307ProSer: 3.307 ± 1.012
3.608ProThr: 3.608 ± 0.994
3.007ProVal: 3.007 ± 0.78
0.301ProTrp: 0.301 ± 0.23
1.804ProTyr: 1.804 ± 0.805
0.0ProXaa: 0.0 ± 0.0
Gln
3.608GlnAla: 3.608 ± 1.343
0.601GlnCys: 0.601 ± 0.56
1.804GlnAsp: 1.804 ± 0.988
1.203GlnGlu: 1.203 ± 0.118
1.203GlnPhe: 1.203 ± 0.759
1.503GlnGly: 1.503 ± 0.639
0.301GlnHis: 0.301 ± 0.297
1.203GlnIle: 1.203 ± 0.452
1.804GlnLys: 1.804 ± 0.674
6.615GlnLeu: 6.615 ± 1.72
0.902GlnMet: 0.902 ± 0.542
1.203GlnAsn: 1.203 ± 0.325
1.503GlnPro: 1.503 ± 0.699
2.706GlnGln: 2.706 ± 0.807
2.706GlnArg: 2.706 ± 0.447
1.804GlnSer: 1.804 ± 0.502
2.105GlnThr: 2.105 ± 0.665
4.209GlnVal: 4.209 ± 1.051
0.301GlnTrp: 0.301 ± 0.23
1.503GlnTyr: 1.503 ± 0.426
0.0GlnXaa: 0.0 ± 0.0
Arg
8.118ArgAla: 8.118 ± 1.812
0.301ArgCys: 0.301 ± 0.28
3.307ArgAsp: 3.307 ± 0.575
5.412ArgGlu: 5.412 ± 1.44
2.706ArgPhe: 2.706 ± 0.759
4.811ArgGly: 4.811 ± 0.629
1.503ArgHis: 1.503 ± 0.597
2.105ArgIle: 2.105 ± 0.964
3.007ArgLys: 3.007 ± 1.001
8.419ArgLeu: 8.419 ± 0.925
1.503ArgMet: 1.503 ± 0.539
1.203ArgAsn: 1.203 ± 0.583
1.804ArgPro: 1.804 ± 0.277
3.608ArgGln: 3.608 ± 0.353
4.51ArgArg: 4.51 ± 0.781
5.412ArgSer: 5.412 ± 1.572
3.007ArgThr: 3.007 ± 0.7
7.216ArgVal: 7.216 ± 1.421
2.105ArgTrp: 2.105 ± 0.72
3.007ArgTyr: 3.007 ± 0.557
0.0ArgXaa: 0.0 ± 0.0
Ser
7.817SerAla: 7.817 ± 1.353
1.203SerCys: 1.203 ± 0.118
3.909SerAsp: 3.909 ± 1.258
3.608SerGlu: 3.608 ± 0.985
2.105SerPhe: 2.105 ± 0.758
7.517SerGly: 7.517 ± 0.674
0.902SerHis: 0.902 ± 0.251
2.706SerIle: 2.706 ± 0.771
1.503SerLys: 1.503 ± 0.35
7.517SerLeu: 7.517 ± 0.643
2.105SerMet: 2.105 ± 0.828
2.405SerAsn: 2.405 ± 0.826
3.909SerPro: 3.909 ± 0.976
3.307SerGln: 3.307 ± 0.633
5.713SerArg: 5.713 ± 1.505
3.307SerSer: 3.307 ± 0.526
2.405SerThr: 2.405 ± 0.499
5.111SerVal: 5.111 ± 0.748
1.503SerTrp: 1.503 ± 0.345
0.902SerTyr: 0.902 ± 0.494
0.0SerXaa: 0.0 ± 0.0
Thr
6.615ThrAla: 6.615 ± 1.701
0.902ThrCys: 0.902 ± 0.579
3.307ThrAsp: 3.307 ± 0.746
2.105ThrGlu: 2.105 ± 0.572
1.503ThrPhe: 1.503 ± 0.505
4.811ThrGly: 4.811 ± 0.47
2.105ThrHis: 2.105 ± 0.72
0.902ThrIle: 0.902 ± 0.277
2.405ThrLys: 2.405 ± 0.486
3.909ThrLeu: 3.909 ± 0.718
0.902ThrMet: 0.902 ± 0.251
2.405ThrAsn: 2.405 ± 1.154
2.706ThrPro: 2.706 ± 1.174
2.706ThrGln: 2.706 ± 0.945
4.51ThrArg: 4.51 ± 0.701
2.706ThrSer: 2.706 ± 0.456
3.307ThrThr: 3.307 ± 0.721
3.608ThrVal: 3.608 ± 0.559
1.503ThrTrp: 1.503 ± 0.356
2.105ThrTyr: 2.105 ± 0.784
0.0ThrXaa: 0.0 ± 0.0
Val
10.824ValAla: 10.824 ± 1.66
1.203ValCys: 1.203 ± 0.836
3.608ValAsp: 3.608 ± 0.588
4.51ValGlu: 4.51 ± 1.132
1.503ValPhe: 1.503 ± 0.463
3.909ValGly: 3.909 ± 0.86
2.105ValHis: 2.105 ± 0.983
2.105ValIle: 2.105 ± 0.375
2.105ValLys: 2.105 ± 1.266
10.222ValLeu: 10.222 ± 1.462
2.105ValMet: 2.105 ± 0.262
2.105ValAsn: 2.105 ± 1.387
3.909ValPro: 3.909 ± 0.477
0.301ValGln: 0.301 ± 0.297
5.111ValArg: 5.111 ± 0.553
4.811ValSer: 4.811 ± 1.165
4.811ValThr: 4.811 ± 1.495
8.118ValVal: 8.118 ± 0.613
0.902ValTrp: 0.902 ± 0.533
3.909ValTyr: 3.909 ± 1.01
0.0ValXaa: 0.0 ± 0.0
Trp
1.203TrpAla: 1.203 ± 0.527
0.301TrpCys: 0.301 ± 0.23
0.601TrpAsp: 0.601 ± 0.263
0.301TrpGlu: 0.301 ± 0.28
0.601TrpPhe: 0.601 ± 0.459
0.902TrpGly: 0.902 ± 0.559
0.301TrpHis: 0.301 ± 0.23
0.301TrpIle: 0.301 ± 0.28
0.301TrpLys: 0.301 ± 0.23
1.203TrpLeu: 1.203 ± 0.352
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.601TrpPro: 0.601 ± 0.562
0.902TrpGln: 0.902 ± 0.347
1.804TrpArg: 1.804 ± 0.911
1.203TrpSer: 1.203 ± 0.601
1.203TrpThr: 1.203 ± 0.724
2.405TrpVal: 2.405 ± 0.556
0.0TrpTrp: 0.0 ± 0.0
0.601TrpTyr: 0.601 ± 0.362
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.706TyrAla: 2.706 ± 0.655
1.203TyrCys: 1.203 ± 0.471
1.203TyrAsp: 1.203 ± 0.325
2.405TyrGlu: 2.405 ± 0.908
1.203TyrPhe: 1.203 ± 0.919
5.111TyrGly: 5.111 ± 1.596
0.301TyrHis: 0.301 ± 0.281
1.503TyrIle: 1.503 ± 0.584
1.203TyrLys: 1.203 ± 0.724
2.706TyrLeu: 2.706 ± 1.324
1.203TyrMet: 1.203 ± 0.317
1.203TyrAsn: 1.203 ± 0.516
0.601TyrPro: 0.601 ± 0.291
0.601TyrGln: 0.601 ± 0.3
2.405TyrArg: 2.405 ± 0.959
2.706TyrSer: 2.706 ± 0.709
0.902TyrThr: 0.902 ± 0.256
2.405TyrVal: 2.405 ± 1.053
0.0TyrTrp: 0.0 ± 0.0
1.503TyrTyr: 1.503 ± 0.467
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.301XaaLeu: 0.301 ± 0.281
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (3327 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski