Helicobacter bizzozeronii CCUG 35545

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter bizzozeronii

Average proteome isoelectric point is 7.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2512 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H5VEU7|H5VEU7_HELBI Flagellar FliJ protein OS=Helicobacter bizzozeronii CCUG 35545 OX=1002805 GN=HBZS_122270 PE=3 SV=1
MM1 pKa = 7.38EE2 pKa = 5.74AFIIDD7 pKa = 3.96LWDD10 pKa = 3.72KK11 pKa = 11.09YY12 pKa = 10.75AATWGYY18 pKa = 10.84LILFFWSILEE28 pKa = 4.1GEE30 pKa = 4.5IGLILAGIASYY41 pKa = 10.25AGHH44 pKa = 6.31MNIFLAILVAGLGGFTGDD62 pKa = 4.46QIYY65 pKa = 9.55FLCGQDD71 pKa = 2.99

Molecular weight: 7.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H5VEK2|H5VEK2_HELBI F420_oxidored domain-containing protein OS=Helicobacter bizzozeronii CCUG 35545 OX=1002805 GN=HBZS_121320 PE=4 SV=1
MM1 pKa = 7.29SAGNILYY8 pKa = 9.85VFSSRR13 pKa = 11.84RR14 pKa = 11.84ACNAFCAQQEE24 pKa = 4.43DD25 pKa = 4.92GFLPTIWSVSEE36 pKa = 4.71FYY38 pKa = 11.13SQVSYY43 pKa = 11.34VPHH46 pKa = 6.09LQKK49 pKa = 10.74NPRR52 pKa = 11.84GRR54 pKa = 11.84APSALNACDD63 pKa = 3.51PGGARR68 pKa = 11.84RR69 pKa = 11.84GRR71 pKa = 11.84FKK73 pKa = 10.88RR74 pKa = 11.84FRR76 pKa = 11.84KK77 pKa = 9.66LDD79 pKa = 4.25RR80 pKa = 11.84II81 pKa = 4.12

Molecular weight: 9.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2512

0

2512

517845

37

2004

206.1

23.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.767 ± 0.051

1.352 ± 0.027

4.713 ± 0.038

5.736 ± 0.066

4.937 ± 0.042

6.631 ± 0.06

2.782 ± 0.029

6.46 ± 0.045

7.084 ± 0.054

11.289 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.454 ± 0.026

4.345 ± 0.05

4.237 ± 0.04

4.921 ± 0.048

3.985 ± 0.036

6.276 ± 0.047

4.561 ± 0.048

5.971 ± 0.048

0.904 ± 0.019

3.594 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski