Saimiriine herpesvirus 2 (SaHV-2) (Herpesvirus saimiri)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 79 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9Q1U7|Q9Q1U7_SHV2 ORF50b protein short form OS=Saimiriine herpesvirus 2 OX=10381 PE=4 SV=1
MM1 pKa = 7.29NNEE4 pKa = 3.96EE5 pKa = 4.14EE6 pKa = 4.21PVYY9 pKa = 11.0EE10 pKa = 4.72EE11 pKa = 3.82IHH13 pKa = 6.32PLRR16 pKa = 11.84PQLVDD21 pKa = 3.62TEE23 pKa = 4.5NLDD26 pKa = 3.57LDD28 pKa = 4.42IYY30 pKa = 11.52DD31 pKa = 4.39DD32 pKa = 4.25VCFLEE37 pKa = 5.02DD38 pKa = 3.65NSYY41 pKa = 11.93DD42 pKa = 3.93DD43 pKa = 4.3ACCVYY48 pKa = 10.38TPLKK52 pKa = 10.03KK53 pKa = 10.67SSVEE57 pKa = 3.77YY58 pKa = 10.65NQLKK62 pKa = 7.82TQTEE66 pKa = 4.05NLEE69 pKa = 3.74VHH71 pKa = 6.55IYY73 pKa = 10.49EE74 pKa = 4.87EE75 pKa = 4.53IVV77 pKa = 2.99

Molecular weight: 9.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O40641|O40641_SHV2 Thymidine kinase OS=Saimiriine herpesvirus 2 OX=10381 GN=orf21 PE=3 SV=1
MM1 pKa = 7.48LSVIKK6 pKa = 10.65QRR8 pKa = 11.84DD9 pKa = 3.82KK10 pKa = 11.35EE11 pKa = 4.44VLAHH15 pKa = 6.66LPNKK19 pKa = 10.23RR20 pKa = 11.84KK21 pKa = 9.73IEE23 pKa = 4.03GNKK26 pKa = 9.85AHH28 pKa = 7.15LEE30 pKa = 4.33TYY32 pKa = 10.34KK33 pKa = 10.94KK34 pKa = 9.52LAKK37 pKa = 8.8YY38 pKa = 7.35TVSASIFKK46 pKa = 10.11FLSISHH52 pKa = 7.1PCPLRR57 pKa = 11.84AKK59 pKa = 8.15TQLFFEE65 pKa = 4.61VSLGNRR71 pKa = 11.84IADD74 pKa = 3.5CVMLTSCGEE83 pKa = 3.8TRR85 pKa = 11.84ICYY88 pKa = 9.91VIEE91 pKa = 5.04LKK93 pKa = 9.68TCMTSNLDD101 pKa = 4.08LISDD105 pKa = 3.47IRR107 pKa = 11.84KK108 pKa = 8.14SQRR111 pKa = 11.84SQGLCQLADD120 pKa = 3.54TVNFIHH126 pKa = 6.91NYY128 pKa = 9.98APLGRR133 pKa = 11.84QAWTVLPILIFKK145 pKa = 8.45SQKK148 pKa = 7.13TLKK151 pKa = 8.48TLHH154 pKa = 6.58IEE156 pKa = 4.28TPKK159 pKa = 10.59FPVNLTHH166 pKa = 6.84TSEE169 pKa = 4.31EE170 pKa = 4.15KK171 pKa = 10.67LSCFLWSRR179 pKa = 11.84ADD181 pKa = 3.27VEE183 pKa = 4.21IRR185 pKa = 11.84KK186 pKa = 9.68KK187 pKa = 10.08IHH189 pKa = 6.44LAPKK193 pKa = 9.5PKK195 pKa = 10.16RR196 pKa = 11.84ILKK199 pKa = 9.3WDD201 pKa = 3.71SLLDD205 pKa = 3.7STSTEE210 pKa = 3.56HH211 pKa = 6.05SAYY214 pKa = 9.45RR215 pKa = 11.84QKK217 pKa = 11.03LIEE220 pKa = 4.22RR221 pKa = 11.84NKK223 pKa = 10.25KK224 pKa = 9.85KK225 pKa = 10.71CFTLQNQTSKK235 pKa = 10.7FRR237 pKa = 11.84DD238 pKa = 3.52RR239 pKa = 11.84PNKK242 pKa = 9.86KK243 pKa = 10.71GNDD246 pKa = 3.43QLRR249 pKa = 11.84ARR251 pKa = 11.84QANARR256 pKa = 11.84PCKK259 pKa = 10.09KK260 pKa = 9.73KK261 pKa = 9.4QHH263 pKa = 5.06NNKK266 pKa = 9.67RR267 pKa = 11.84LRR269 pKa = 11.84NNRR272 pKa = 11.84KK273 pKa = 9.16HH274 pKa = 5.69GGKK277 pKa = 9.77VSRR280 pKa = 11.84LATATSFFSEE290 pKa = 4.19AAIPNYY296 pKa = 10.22SVPTHH301 pKa = 6.0KK302 pKa = 10.54RR303 pKa = 3.06

Molecular weight: 34.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

78

1

79

34276

66

2477

433.9

49.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.085 ± 0.201

2.728 ± 0.208

4.598 ± 0.215

5.89 ± 0.553

4.805 ± 0.177

3.901 ± 0.278

2.693 ± 0.096

7.206 ± 0.227

6.78 ± 0.274

10.331 ± 0.239

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.217 ± 0.104

5.549 ± 0.16

5.071 ± 0.231

3.898 ± 0.188

3.314 ± 0.183

8.423 ± 0.191

6.71 ± 0.241

5.972 ± 0.203

1.044 ± 0.064

3.784 ± 0.134
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski