Candidatus Phycosocius bacilliformis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Alphaproteobacteria incertae sedis; Candidatus Phycosocius

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3121 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P2EDJ2|A0A2P2EDJ2_9PROT Uncharacterized protein OS=Candidatus Phycosocius bacilliformis OX=1445552 GN=PbB2_02819 PE=4 SV=1
MM1 pKa = 7.17SQEE4 pKa = 4.09QSNQAYY10 pKa = 9.49YY11 pKa = 10.91AGRR14 pKa = 11.84TDD16 pKa = 3.19AFNGVGQQTIADD28 pKa = 3.76QSSNLQTDD36 pKa = 3.57YY37 pKa = 11.58DD38 pKa = 3.55QGYY41 pKa = 9.78RR42 pKa = 11.84DD43 pKa = 4.1ANSEE47 pKa = 3.95IKK49 pKa = 10.47LDD51 pKa = 5.24QDD53 pKa = 4.31TEE55 pKa = 3.84WDD57 pKa = 3.32

Molecular weight: 6.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P2EDU5|A0A2P2EDU5_9PROT NAD(P) transhydrogenase subunit alpha part 1 OS=Candidatus Phycosocius bacilliformis OX=1445552 GN=pntAA PE=3 SV=1
MM1 pKa = 7.5GLACGCLTLSLALASPACAQSAKK24 pKa = 10.18RR25 pKa = 11.84GQEE28 pKa = 3.56LTFNDD33 pKa = 3.76MFEE36 pKa = 4.68SPNAAAPQAVAFAAGPNNLRR56 pKa = 11.84FVLDD60 pKa = 4.2RR61 pKa = 11.84SQPRR65 pKa = 11.84VVLLQFDD72 pKa = 4.3GDD74 pKa = 4.17PEE76 pKa = 4.31VWALTSSWGPRR87 pKa = 11.84GDD89 pKa = 3.2EE90 pKa = 4.45FLRR93 pKa = 11.84NDD95 pKa = 3.07IGEE98 pKa = 4.33VIVRR102 pKa = 11.84ITTLGGVTVYY112 pKa = 11.1GPLGTNGGLAASQGKK127 pKa = 9.65AKK129 pKa = 10.41SLPAPSRR136 pKa = 11.84SEE138 pKa = 3.81GTLQATLQKK147 pKa = 10.64ALRR150 pKa = 11.84WFDD153 pKa = 3.53RR154 pKa = 11.84FSSRR158 pKa = 11.84SIRR161 pKa = 11.84VEE163 pKa = 3.63ASGGLPPALVHH174 pKa = 6.23EE175 pKa = 4.62ALEE178 pKa = 4.36RR179 pKa = 11.84AAQGMSRR186 pKa = 11.84APRR189 pKa = 11.84GYY191 pKa = 9.62FGRR194 pKa = 11.84PEE196 pKa = 4.07RR197 pKa = 11.84KK198 pKa = 8.74VKK200 pKa = 10.68LIRR203 pKa = 11.84VQRR206 pKa = 11.84SFDD209 pKa = 3.52QPSVRR214 pKa = 11.84WQSGVLTIGVVPGAGYY230 pKa = 10.7AGRR233 pKa = 11.84PSSAAVLLALTRR245 pKa = 11.84SRR247 pKa = 4.21

Molecular weight: 26.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3121

0

3121

996773

31

1742

319.4

34.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.814 ± 0.071

0.862 ± 0.017

5.755 ± 0.031

5.173 ± 0.038

3.703 ± 0.026

8.56 ± 0.042

1.968 ± 0.023

5.151 ± 0.033

3.467 ± 0.033

10.06 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.412 ± 0.021

2.714 ± 0.03

5.394 ± 0.035

3.642 ± 0.027

6.733 ± 0.04

5.549 ± 0.031

5.405 ± 0.032

7.119 ± 0.039

1.417 ± 0.018

2.101 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski