Salmonella bongori

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6192 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A447M053|A0A447M053_SALBN Holo-[acyl-carrier-protein] synthase OS=Salmonella bongori OX=54736 GN=acpS PE=3 SV=1
MM1 pKa = 6.79ITVIAIDD8 pKa = 3.47AAGNASPVSDD18 pKa = 3.24SVNFVVDD25 pKa = 3.89TTPPLAPVITSVSDD39 pKa = 3.52DD40 pKa = 3.59QAPGLGTIATGQNTNDD56 pKa = 3.57PTPTFSGTAEE66 pKa = 4.03AGATITLYY74 pKa = 11.12EE75 pKa = 4.43NGTVIGTTTAQPDD88 pKa = 4.42GAWSVPTSTLASGTHH103 pKa = 6.44VITAVATDD111 pKa = 3.5TAGNDD116 pKa = 3.92SPNSTAFTLTVDD128 pKa = 3.85TTAPQTPILTSVVDD142 pKa = 4.27DD143 pKa = 3.81VAGGVTGNLANGQITNDD160 pKa = 3.47NRR162 pKa = 11.84PTLNGTAEE170 pKa = 4.26AGSVVSIYY178 pKa = 11.08DD179 pKa = 3.44GDD181 pKa = 3.95TLLGVTSANTGGAWSFTPTTGLNDD205 pKa = 3.54GTHH208 pKa = 5.22TLKK211 pKa = 9.55VTATDD216 pKa = 3.52PAGNVSPATSGFTIVVDD233 pKa = 3.97TLAPTLPLITSIIDD247 pKa = 3.31DD248 pKa = 3.77VLNNTGAISNGQSTNDD264 pKa = 3.58TQPTLNGTAEE274 pKa = 4.2ANSAVNIFDD283 pKa = 3.8NGTLVATVNASANGNWSWTPTVEE306 pKa = 4.67LGQGSHH312 pKa = 6.9AYY314 pKa = 9.73SVSAADD320 pKa = 3.33AAGNISAASQLTTIIVDD337 pKa = 3.79TLAPGTPGNLVINATGNRR355 pKa = 11.84VTGTAEE361 pKa = 4.09AGSMVTITSDD371 pKa = 3.07TGVVLGTATADD382 pKa = 3.5GTGSFTATLTPAQTNGQPLLAFAQDD407 pKa = 3.34KK408 pKa = 11.01AGNTGIAARR417 pKa = 11.84FTAPDD422 pKa = 3.4TRR424 pKa = 11.84VPEE427 pKa = 4.26APVITNIVDD436 pKa = 3.42DD437 pKa = 4.05VGIYY441 pKa = 9.83TGVIANGQVTNDD453 pKa = 3.81ARR455 pKa = 11.84PTLNGTAQAGATVSIYY471 pKa = 11.32NNGALLGITTANASGNWSFTPTGNLTEE498 pKa = 4.61GSHH501 pKa = 6.73AFTATATNANGTGSVSTAATVMVDD525 pKa = 3.1TLAPGTPSGTLSADD539 pKa = 3.37GGSLSGLAEE548 pKa = 4.49ANSTVTVTLAGGVTLTTTAGSNGAWSLTLPTKK580 pKa = 10.44QIEE583 pKa = 4.44GQLINVTATDD593 pKa = 3.5AAGNASGTLGITAPVLPLAARR614 pKa = 11.84DD615 pKa = 4.2NITSLDD621 pKa = 3.9LTSTAATSTQHH632 pKa = 5.66YY633 pKa = 9.99SDD635 pKa = 4.27YY636 pKa = 11.63GLLLVGALGNVASVLGNDD654 pKa = 3.59TAQVEE659 pKa = 4.44FTIAEE664 pKa = 4.54GGTGDD669 pKa = 3.66VTIDD673 pKa = 3.14AAATGIVLSLLSTQEE688 pKa = 3.94IVVQRR693 pKa = 11.84YY694 pKa = 7.26DD695 pKa = 3.21TSLGAWTTIVNTAVGDD711 pKa = 3.91FANLLTLTGSGVTLNLSGLSEE732 pKa = 3.9GQYY735 pKa = 10.58RR736 pKa = 11.84VLTYY740 pKa = 9.12NTSLLATGSYY750 pKa = 10.1TSLDD754 pKa = 3.32VDD756 pKa = 3.58VHH758 pKa = 4.66QTSAGIISGPTINTGNVMADD778 pKa = 3.28DD779 pKa = 4.18TAPTGTTVTAITNASGISSPVGAGGVDD806 pKa = 2.88IQGQYY811 pKa = 8.41GTLHH815 pKa = 6.56INQDD819 pKa = 2.73GSYY822 pKa = 9.43TYY824 pKa = 10.99TLTNPTAGYY833 pKa = 8.61GHH835 pKa = 7.14KK836 pKa = 10.71EE837 pKa = 3.72NFTYY841 pKa = 10.21TITQNGVGSSTAQLVINLGPAPVPGSVVATDD872 pKa = 3.83NNASLVFDD880 pKa = 3.12THH882 pKa = 7.16VNYY885 pKa = 10.43VNNGPSTQSGVTVLSVGLGNVLSANLLDD913 pKa = 5.77DD914 pKa = 3.61MTNPILFNVEE924 pKa = 3.6EE925 pKa = 4.77GATRR929 pKa = 11.84TLTLQGTVGGVSLVSTFDD947 pKa = 3.41LYY949 pKa = 11.31VYY951 pKa = 10.37RR952 pKa = 11.84FNDD955 pKa = 3.53VIQQYY960 pKa = 8.12EE961 pKa = 3.84QFRR964 pKa = 11.84VQKK967 pKa = 10.52GWINTLLLAGQSQPLTLTLPGGEE990 pKa = 4.13YY991 pKa = 10.81LFVLNTASGISVLTGYY1007 pKa = 8.41TLTVSQDD1014 pKa = 2.51HH1015 pKa = 6.58TYY1017 pKa = 11.3AVDD1020 pKa = 3.51SMTANTTGNVLTNDD1034 pKa = 3.5IAPADD1039 pKa = 3.77ALLTEE1044 pKa = 4.49VNGVAISATGTTEE1057 pKa = 3.84INGLYY1062 pKa = 8.62GTLTIDD1068 pKa = 3.28AKK1070 pKa = 11.3GNYY1073 pKa = 8.46TYY1075 pKa = 10.1TLKK1078 pKa = 11.12NGVGADD1084 pKa = 4.22GIKK1087 pKa = 9.81TPDD1090 pKa = 3.06SFIYY1094 pKa = 9.0TVKK1097 pKa = 10.74APNGDD1102 pKa = 3.43TDD1104 pKa = 3.94TASLNITPTARR1115 pKa = 11.84DD1116 pKa = 3.13LDD1118 pKa = 4.77AINDD1122 pKa = 3.64VSDD1125 pKa = 3.84TLSVATLQDD1134 pKa = 3.04TAAWLDD1140 pKa = 3.64SSVGSASWGLLGKK1153 pKa = 10.03SGSGSGTFDD1162 pKa = 3.08VATGTVLKK1170 pKa = 10.45GASLVFDD1177 pKa = 4.06VSTLITLGNLNISWTIQEE1195 pKa = 4.29NGTVIRR1201 pKa = 11.84NGTVPVANITLGGATVTVNLSGLEE1225 pKa = 4.01LDD1227 pKa = 4.05AGTYY1231 pKa = 7.75TLNFTGTNTLAGAATITPRR1250 pKa = 11.84VIGTTVDD1257 pKa = 3.36LDD1259 pKa = 3.63NFEE1262 pKa = 4.46TSGTHH1267 pKa = 4.84TVPGNIFDD1275 pKa = 4.44GSDD1278 pKa = 2.76AAGAMDD1284 pKa = 4.74QLNTVNTRR1292 pKa = 11.84LSISGYY1298 pKa = 9.16NGSAATLDD1306 pKa = 3.51AAANTTSATIQGHH1319 pKa = 5.86YY1320 pKa = 8.63GTLQINLDD1328 pKa = 3.33GAYY1331 pKa = 9.35TYY1333 pKa = 10.31TLNNGVAISSITHH1346 pKa = 6.16KK1347 pKa = 10.8EE1348 pKa = 3.86VFTYY1352 pKa = 10.71QLDD1355 pKa = 4.04DD1356 pKa = 4.3KK1357 pKa = 11.44NGHH1360 pKa = 5.78TDD1362 pKa = 3.19SATLTIDD1369 pKa = 3.2MAPQIVSTNQNDD1381 pKa = 3.75VLIGSAYY1388 pKa = 10.11GDD1390 pKa = 3.38TLIYY1394 pKa = 10.54HH1395 pKa = 7.46LLNSADD1401 pKa = 3.43ATGGNGADD1409 pKa = 2.93RR1410 pKa = 11.84WQNFSTAQGDD1420 pKa = 3.76KK1421 pKa = 10.55IDD1423 pKa = 3.45IHH1425 pKa = 6.44EE1426 pKa = 5.34LLTGWDD1432 pKa = 3.71HH1433 pKa = 5.81QTATLGNFIQVSTSGANTVISVDD1456 pKa = 3.37RR1457 pKa = 11.84DD1458 pKa = 3.52GAGSAFKK1465 pKa = 10.2ATDD1468 pKa = 3.49LVTLEE1473 pKa = 4.08NVQLSLNDD1481 pKa = 3.86LLQNNHH1487 pKa = 7.48LITGGG1492 pKa = 3.36

Molecular weight: 150.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S5D914|A0A3S5D914_SALBN Glutathione ABC transporter ATP-binding protein OS=Salmonella bongori OX=54736 GN=yheS_3 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSKK46 pKa = 10.99

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6192

0

6192

1208264

29

2133

195.1

21.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.629 ± 0.037

1.254 ± 0.014

5.117 ± 0.029

5.395 ± 0.035

3.851 ± 0.023

7.439 ± 0.031

2.334 ± 0.018

5.833 ± 0.03

4.198 ± 0.03

10.545 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.889 ± 0.02

3.808 ± 0.025

4.569 ± 0.024

4.299 ± 0.028

5.991 ± 0.037

5.894 ± 0.026

5.536 ± 0.038

6.937 ± 0.03

1.579 ± 0.018

2.903 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski