Peromyscus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Iotapapillomavirus; Iotapapillomavirus 2

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1C9I5|G1C9I5_9PAPI Replication protein E1 OS=Peromyscus papillomavirus 1 OX=1074206 GN=E1 PE=3 SV=1
MM1 pKa = 7.65IGPEE5 pKa = 3.64ATLRR9 pKa = 11.84DD10 pKa = 3.69IVLEE14 pKa = 3.96EE15 pKa = 4.5SPPEE19 pKa = 4.16TVSLYY24 pKa = 10.67CDD26 pKa = 3.21EE27 pKa = 4.43TLSEE31 pKa = 4.25EE32 pKa = 4.34EE33 pKa = 4.3EE34 pKa = 4.2EE35 pKa = 4.66EE36 pKa = 4.14EE37 pKa = 4.67AEE39 pKa = 4.32SISPYY44 pKa = 10.02RR45 pKa = 11.84VYY47 pKa = 10.84APCYY51 pKa = 8.31RR52 pKa = 11.84CDD54 pKa = 3.5RR55 pKa = 11.84SVRR58 pKa = 11.84LVVSATEE65 pKa = 3.7NGIRR69 pKa = 11.84GLEE72 pKa = 3.92KK73 pKa = 10.82LLLGDD78 pKa = 3.7VSIVCPSCAVCVRR91 pKa = 11.84PTGHH95 pKa = 7.15HH96 pKa = 6.58GGQAA100 pKa = 3.07

Molecular weight: 10.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1C9I7|G1C9I7_9PAPI Minor capsid protein L2 OS=Peromyscus papillomavirus 1 OX=1074206 GN=L2 PE=3 SV=1
MM1 pKa = 7.48EE2 pKa = 5.13SLVSRR7 pKa = 11.84LSVVQEE13 pKa = 4.54EE14 pKa = 4.59LMCMYY19 pKa = 10.48EE20 pKa = 4.12RR21 pKa = 11.84GEE23 pKa = 4.29DD24 pKa = 3.58TLEE27 pKa = 4.08SQVLHH32 pKa = 6.4WSLIRR37 pKa = 11.84KK38 pKa = 7.3EE39 pKa = 4.07QVLLHH44 pKa = 6.98AARR47 pKa = 11.84QHH49 pKa = 5.51GLNKK53 pKa = 9.87IGLQVVPPLGVTQTNAKK70 pKa = 9.71NAIEE74 pKa = 3.87MHH76 pKa = 6.4LRR78 pKa = 11.84LQSLANTPHH87 pKa = 6.94AKK89 pKa = 10.26EE90 pKa = 3.9PWTLSEE96 pKa = 4.42TSRR99 pKa = 11.84EE100 pKa = 4.22MYY102 pKa = 9.75MSAPEE107 pKa = 3.83QTFKK111 pKa = 11.15KK112 pKa = 10.11GGCTVHH118 pKa = 7.22VYY120 pKa = 11.22YY121 pKa = 10.93DD122 pKa = 3.84GNKK125 pKa = 8.17EE126 pKa = 3.59NAMQYY131 pKa = 9.46VKK133 pKa = 10.21WRR135 pKa = 11.84FIYY138 pKa = 9.97WLDD141 pKa = 4.82DD142 pKa = 3.35KK143 pKa = 11.47GVWQRR148 pKa = 11.84STSFSDD154 pKa = 2.98HH155 pKa = 5.77TGIYY159 pKa = 9.44YY160 pKa = 10.41EE161 pKa = 4.0PGGRR165 pKa = 11.84KK166 pKa = 7.42TYY168 pKa = 10.87YY169 pKa = 9.23VTFAQDD175 pKa = 2.96AARR178 pKa = 11.84YY179 pKa = 6.77STSSLWEE186 pKa = 3.76VHH188 pKa = 6.92DD189 pKa = 4.74GPEE192 pKa = 3.39IHH194 pKa = 6.86LPVVPVTSSTPTSNPKK210 pKa = 9.65RR211 pKa = 11.84VAGIYY216 pKa = 9.86PDD218 pKa = 4.42GPPTTRR224 pKa = 11.84PGLSSGDD231 pKa = 3.66SSGHH235 pKa = 6.51LDD237 pKa = 3.38GLAGGGSDD245 pKa = 3.37TCGGLQIPDD254 pKa = 3.96SPSEE258 pKa = 4.22RR259 pKa = 11.84PTKK262 pKa = 10.28RR263 pKa = 11.84PRR265 pKa = 11.84QRR267 pKa = 11.84QPQDD271 pKa = 2.98GQGPKK276 pKa = 9.21RR277 pKa = 11.84RR278 pKa = 11.84KK279 pKa = 9.81RR280 pKa = 11.84EE281 pKa = 3.94GTLKK285 pKa = 10.6RR286 pKa = 11.84IALGPRR292 pKa = 11.84EE293 pKa = 4.24TGEE296 pKa = 4.29GAASRR301 pKa = 11.84DD302 pKa = 3.42PRR304 pKa = 11.84TPTGPRR310 pKa = 11.84PIPFTEE316 pKa = 4.54EE317 pKa = 3.72PSQGGGGPEE326 pKa = 4.11SPGGPRR332 pKa = 11.84SAPILSPAPHH342 pKa = 6.16SVEE345 pKa = 3.69TDD347 pKa = 3.32GPAFGSQVGGQSQAPRR363 pKa = 11.84RR364 pKa = 11.84PRR366 pKa = 11.84SPSPPSLLAEE376 pKa = 4.31SAALPTASQLGQIAGGSQDD395 pKa = 3.39PPPRR399 pKa = 11.84RR400 pKa = 11.84GRR402 pKa = 11.84APRR405 pKa = 11.84GQPGLPILLVCKK417 pKa = 9.78GTANQVKK424 pKa = 9.82CFRR427 pKa = 11.84HH428 pKa = 5.37KK429 pKa = 10.9LKK431 pKa = 9.85TVYY434 pKa = 9.86PGCFDD439 pKa = 4.28FCTTTWNWVDD449 pKa = 3.35PSGSGTRR456 pKa = 11.84MGRR459 pKa = 11.84SRR461 pKa = 11.84MLILCRR467 pKa = 11.84DD468 pKa = 3.61EE469 pKa = 4.12QQYY472 pKa = 11.97DD473 pKa = 3.5MFTEE477 pKa = 4.42EE478 pKa = 4.16VKK480 pKa = 10.82VPRR483 pKa = 11.84GMQVDD488 pKa = 3.45MCITHH493 pKa = 7.44RR494 pKa = 11.84LL495 pKa = 3.49

Molecular weight: 54.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2434

100

609

405.7

45.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.875 ± 0.24

2.219 ± 0.899

5.752 ± 0.524

6.286 ± 0.734

3.533 ± 0.542

8.628 ± 1.274

2.383 ± 0.155

4.437 ± 0.51

4.026 ± 0.749

7.354 ± 0.757

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.931 ± 0.419

3.246 ± 0.827

7.108 ± 1.062

4.15 ± 0.555

7.313 ± 0.338

8.094 ± 1.098

5.916 ± 0.514

7.025 ± 0.366

1.356 ± 0.354

3.369 ± 0.392
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski