Jimgerdemannia flammicorona

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Endogonomycetes; Endogonales; Endogonaceae; Jimgerdemannia

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13497 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A433DJH7|A0A433DJH7_9FUNG Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC936DRAFT_137279 PE=4 SV=1
MM1 pKa = 8.03PLTLLNSPPSLEE13 pKa = 4.35GEE15 pKa = 4.26PIRR18 pKa = 11.84YY19 pKa = 6.22QQCDD23 pKa = 2.93IRR25 pKa = 11.84MVITPPLSGVSDD37 pKa = 3.54AGKK40 pKa = 10.66GNLVVAEE47 pKa = 4.21SQLYY51 pKa = 9.52FYY53 pKa = 11.0SLSTTISVAIPYY65 pKa = 9.46PSIIIHH71 pKa = 6.67AISRR75 pKa = 11.84QEE77 pKa = 3.9GQPCVYY83 pKa = 9.93CQLDD87 pKa = 3.66STEE90 pKa = 4.2KK91 pKa = 10.62LVEE94 pKa = 3.94QRR96 pKa = 11.84HH97 pKa = 5.57GGRR100 pKa = 11.84DD101 pKa = 3.69DD102 pKa = 3.76EE103 pKa = 6.56DD104 pKa = 4.06EE105 pKa = 5.8DD106 pKa = 4.14EE107 pKa = 5.89DD108 pKa = 4.16EE109 pKa = 4.2VTEE112 pKa = 4.37IRR114 pKa = 11.84FVPDD118 pKa = 3.23DD119 pKa = 4.29AGALEE124 pKa = 4.6YY125 pKa = 10.14IYY127 pKa = 10.45IALSEE132 pKa = 4.34CAALHH137 pKa = 6.34PDD139 pKa = 3.35KK140 pKa = 11.22EE141 pKa = 4.44FMVDD145 pKa = 3.43QLEE148 pKa = 4.54DD149 pKa = 3.6EE150 pKa = 4.87HH151 pKa = 9.05DD152 pKa = 4.05GGADD156 pKa = 3.68DD157 pKa = 6.37DD158 pKa = 5.75DD159 pKa = 6.83GYY161 pKa = 11.46DD162 pKa = 3.78YY163 pKa = 11.36DD164 pKa = 5.17NPAADD169 pKa = 4.62TYY171 pKa = 10.64TPSDD175 pKa = 3.58PAEE178 pKa = 4.04LSEE181 pKa = 4.33VGRR184 pKa = 11.84AALAHH189 pKa = 6.28LNSVFQMPSQRR200 pKa = 11.84DD201 pKa = 3.78FEE203 pKa = 4.62QMVAEE208 pKa = 4.39NGHH211 pKa = 5.45TNGVSDD217 pKa = 4.29EE218 pKa = 4.4RR219 pKa = 11.84FGDD222 pKa = 3.8AEE224 pKa = 4.2EE225 pKa = 4.41QGGSNN230 pKa = 3.87

Molecular weight: 25.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A433A2W2|A0A433A2W2_9FUNG Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC936DRAFT_141107 PE=4 SV=1
MM1 pKa = 7.86PLPRR5 pKa = 11.84LQLLPLRR12 pKa = 11.84PRR14 pKa = 11.84PRR16 pKa = 11.84PRR18 pKa = 11.84PRR20 pKa = 11.84PRR22 pKa = 11.84PRR24 pKa = 11.84ARR26 pKa = 11.84LRR28 pKa = 11.84PRR30 pKa = 11.84LRR32 pKa = 11.84PRR34 pKa = 11.84LRR36 pKa = 11.84PRR38 pKa = 11.84LRR40 pKa = 11.84PRR42 pKa = 11.84LRR44 pKa = 11.84TRR46 pKa = 11.84LRR48 pKa = 11.84PRR50 pKa = 11.84LRR52 pKa = 11.84PRR54 pKa = 11.84LRR56 pKa = 11.84NRR58 pKa = 11.84LRR60 pKa = 11.84PRR62 pKa = 11.84LQNRR66 pKa = 11.84LCPRR70 pKa = 11.84LRR72 pKa = 11.84NRR74 pKa = 11.84LRR76 pKa = 11.84PRR78 pKa = 11.84LQNRR82 pKa = 11.84LCPRR86 pKa = 11.84LRR88 pKa = 11.84NRR90 pKa = 11.84LRR92 pKa = 11.84PRR94 pKa = 11.84LRR96 pKa = 11.84SQPFPLRR103 pKa = 11.84HH104 pKa = 5.81HH105 pKa = 6.34QPLPLLLL112 pKa = 4.9

Molecular weight: 14.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13120

377

13497

4714404

8

5143

349.3

38.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.85 ± 0.019

1.516 ± 0.012

5.566 ± 0.017

6.044 ± 0.026

3.795 ± 0.014

6.494 ± 0.027

2.726 ± 0.011

5.136 ± 0.018

5.008 ± 0.023

9.046 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.372 ± 0.01

3.963 ± 0.016

5.89 ± 0.028

3.749 ± 0.021

6.264 ± 0.021

7.697 ± 0.025

6.21 ± 0.017

6.59 ± 0.019

1.314 ± 0.008

2.771 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski