Streptomyces triticagri

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6490 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A372LXY8|A0A372LXY8_9ACTN (2Fe-2S)-binding protein OS=Streptomyces triticagri OX=2293568 GN=DY218_26865 PE=4 SV=1
MM1 pKa = 7.75AGPYY5 pKa = 9.96GWGDD9 pKa = 2.98IHH11 pKa = 7.79DD12 pKa = 4.27STGDD16 pKa = 3.14EE17 pKa = 3.94MTIRR21 pKa = 11.84TTAARR26 pKa = 11.84TVAVALLATGAVAGGTGAATAGDD49 pKa = 3.98GDD51 pKa = 4.08GTIDD55 pKa = 3.39TGVDD59 pKa = 3.38YY60 pKa = 11.09SSPLVVHH67 pKa = 6.72AAAVDD72 pKa = 3.68GDD74 pKa = 4.23GVYY77 pKa = 11.07DD78 pKa = 4.08DD79 pKa = 4.8

Molecular weight: 7.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A372M6D4|A0A372M6D4_9ACTN DinB family protein OS=Streptomyces triticagri OX=2293568 GN=DY218_13700 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AVLASRR35 pKa = 11.84RR36 pKa = 11.84TKK38 pKa = 10.43GRR40 pKa = 11.84ARR42 pKa = 11.84LSAA45 pKa = 3.91

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6490

0

6490

2119865

12

2467

326.6

34.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.555 ± 0.042

0.772 ± 0.007

6.207 ± 0.023

5.852 ± 0.029

2.723 ± 0.016

9.638 ± 0.029

2.288 ± 0.019

3.192 ± 0.021

2.226 ± 0.031

10.261 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.713 ± 0.013

1.662 ± 0.015

6.095 ± 0.028

2.766 ± 0.018

8.049 ± 0.035

5.134 ± 0.018

6.026 ± 0.024

8.337 ± 0.034

1.46 ± 0.013

2.042 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski