Ooceraea biroi (Clonal raider ant) (Cerapachys biroi)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae;

Average proteome isoelectric point is 7.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16497 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A026WYM8|A0A026WYM8_OOCBI Uncharacterized protein (Fragment) OS=Ooceraea biroi OX=2015173 GN=X777_13078 PE=4 SV=1
MM1 pKa = 7.34YY2 pKa = 10.56DD3 pKa = 3.58EE4 pKa = 6.05DD5 pKa = 5.9GSAADD10 pKa = 3.35QKK12 pKa = 10.88MDD14 pKa = 3.04VDD16 pKa = 3.63EE17 pKa = 5.51RR18 pKa = 11.84GVIEE22 pKa = 4.16ASGMVNPEE30 pKa = 3.44QVAAATGGIGVGVGIGVGGPGTTAGGGTGLTGYY63 pKa = 7.75WQHH66 pKa = 6.1ATTATGYY73 pKa = 8.99WPSFFDD79 pKa = 4.14CWTTPPIASGSQTLSLPRR97 pKa = 11.84DD98 pKa = 3.68DD99 pKa = 5.79DD100 pKa = 3.79

Molecular weight: 10.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A026VUU9|A0A026VUU9_OOCBI Uncharacterized protein OS=Ooceraea biroi OX=2015173 GN=X777_16443 PE=4 SV=1
TT1 pKa = 7.27GNGRR5 pKa = 11.84LRR7 pKa = 11.84WWRR10 pKa = 11.84RR11 pKa = 11.84WRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84QRR17 pKa = 11.84LAGRR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84PATCTSRR31 pKa = 11.84RR32 pKa = 11.84GARR35 pKa = 11.84QRR37 pKa = 11.84RR38 pKa = 11.84GVSDD42 pKa = 3.78RR43 pKa = 11.84KK44 pKa = 10.06SHH46 pKa = 5.86GFNATLRR53 pKa = 11.84PFSLTRR59 pKa = 11.84IRR61 pKa = 11.84APTT64 pKa = 3.32

Molecular weight: 7.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16497

0

16497

6790250

14

12890

411.6

46.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.516 ± 0.016

2.038 ± 0.03

5.443 ± 0.02

6.665 ± 0.027

3.574 ± 0.018

5.405 ± 0.022

2.585 ± 0.014

5.64 ± 0.019

6.087 ± 0.027

9.019 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.355 ± 0.011

4.826 ± 0.018

4.971 ± 0.027

4.186 ± 0.019

6.144 ± 0.022

8.033 ± 0.032

5.987 ± 0.019

6.164 ± 0.015

1.108 ± 0.008

3.147 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski