Serendipita vermifera MAFF 305830

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Sebacinales; Serendipitaceae; Serendipita; Serendipita vermifera

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15021 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C2XBL6|A0A0C2XBL6_9AGAM Uncharacterized protein OS=Serendipita vermifera MAFF 305830 OX=933852 GN=M408DRAFT_181172 PE=4 SV=1
LL1 pKa = 7.1ASCFRR6 pKa = 11.84FFLFCCCFGFSGLWGVFPFASAGGGIFWTGGSFFLFLGSGSAAWGLEE53 pKa = 3.76AVGLDD58 pKa = 3.95LMSGNLPGASVVDD71 pKa = 3.91TVTDD75 pKa = 3.83SVGTTSSDD83 pKa = 3.16PTSFSWTCPPVDD95 pKa = 4.0FDD97 pKa = 4.39GPVYY101 pKa = 10.88SYY103 pKa = 10.87MLTPNDD109 pKa = 3.67SLDD112 pKa = 3.7PPEE115 pKa = 4.75YY116 pKa = 10.34SSQFTITSFTGSVDD130 pKa = 3.55VAGVASASVSFNPSPTDD147 pKa = 3.34PDD149 pKa = 3.75VYY151 pKa = 11.01VPSEE155 pKa = 4.14TDD157 pKa = 3.14VADD160 pKa = 4.31ASQGAIHH167 pKa = 7.2LGHH170 pKa = 6.3QADD173 pKa = 3.71ADD175 pKa = 3.94SGEE178 pKa = 4.26EE179 pKa = 4.07LLEE182 pKa = 4.78DD183 pKa = 3.95MPTPLSGSDD192 pKa = 3.39NPQTTAGPEE201 pKa = 3.97GGNFLVQAIDD211 pKa = 3.73DD212 pKa = 4.09TSPDD216 pKa = 3.23ASHH219 pKa = 7.0IKK221 pKa = 10.45SADD224 pKa = 3.33GPQALLQEE232 pKa = 4.51AQAEE236 pKa = 4.61VSTITHH242 pKa = 6.12GVAAAATAQAGSVTASANPGEE263 pKa = 4.47ATGEE267 pKa = 4.01ATRR270 pKa = 11.84MLVSTTRR277 pKa = 11.84SASTSAVSASTTRR290 pKa = 11.84SNLTDD295 pKa = 3.18SSVPALRR302 pKa = 11.84HH303 pKa = 4.59VDD305 pKa = 3.6GVVRR309 pKa = 11.84ALLFALCVGHH319 pKa = 6.76FVLL322 pKa = 6.19

Molecular weight: 32.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C3AMX3|A0A0C3AMX3_9AGAM WD_REPEATS_REGION domain-containing protein OS=Serendipita vermifera MAFF 305830 OX=933852 GN=M408DRAFT_333908 PE=4 SV=1
TT1 pKa = 7.03SRR3 pKa = 11.84GAKK6 pKa = 9.13AVKK9 pKa = 9.85SSKK12 pKa = 10.16ASKK15 pKa = 10.04GVKK18 pKa = 8.54AAKK21 pKa = 9.71GVRR24 pKa = 11.84TAKK27 pKa = 10.2AGKK30 pKa = 8.09VAKK33 pKa = 9.64AAKK36 pKa = 8.97VSKK39 pKa = 10.31GVRR42 pKa = 11.84ATKK45 pKa = 10.58GKK47 pKa = 8.91ATASRR52 pKa = 11.84TASRR56 pKa = 11.84KK57 pKa = 8.21ATVAGRR63 pKa = 11.84KK64 pKa = 6.03VTVAGRR70 pKa = 11.84KK71 pKa = 7.53ATASRR76 pKa = 11.84TSKK79 pKa = 10.67NVAGKK84 pKa = 8.62ATRR87 pKa = 11.84GKK89 pKa = 9.89AAKK92 pKa = 8.4ATKK95 pKa = 9.09STVSRR100 pKa = 11.84SSQKK104 pKa = 8.85LTKK107 pKa = 10.01AAPRR111 pKa = 11.84VAMKK115 pKa = 10.33AATLTTPKK123 pKa = 9.58KK124 pKa = 8.08TGKK127 pKa = 10.35RR128 pKa = 11.84NN129 pKa = 3.15

Molecular weight: 12.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15010

11

15021

6167058

49

4887

410.6

45.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.294 ± 0.023

1.246 ± 0.01

5.352 ± 0.014

5.935 ± 0.02

3.597 ± 0.012

6.577 ± 0.019

2.529 ± 0.009

5.201 ± 0.015

4.639 ± 0.019

9.359 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.137 ± 0.008

3.647 ± 0.01

6.261 ± 0.02

3.809 ± 0.014

6.115 ± 0.014

8.685 ± 0.028

6.256 ± 0.015

6.187 ± 0.015

1.5 ± 0.008

2.675 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski