Gongylonema pulchrum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Spiruroidea; Gongylonematidae; Gongylonema

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26895 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A183DPK0|A0A183DPK0_9BILA DUF2052 domain-containing protein OS=Gongylonema pulchrum OX=637853 GN=GPUH_LOCUS10641 PE=4 SV=1
MM1 pKa = 7.51PADD4 pKa = 4.04EE5 pKa = 5.16VKK7 pKa = 10.06MLQLRR12 pKa = 11.84SFFAEE17 pKa = 3.88EE18 pKa = 4.42DD19 pKa = 3.68DD20 pKa = 4.92DD21 pKa = 5.27GVVANVVLLVILLLLTEE38 pKa = 4.65LFEE41 pKa = 4.6IALADD46 pKa = 4.97EE47 pKa = 4.98IDD49 pKa = 4.16CSDD52 pKa = 3.67VLIVEE57 pKa = 4.46VDD59 pKa = 3.19DD60 pKa = 3.94CTEE63 pKa = 3.92HH64 pKa = 6.36GRR66 pKa = 11.84CGGEE70 pKa = 3.81RR71 pKa = 11.84TPLGAAISDD80 pKa = 3.69AYY82 pKa = 10.12YY83 pKa = 10.83NRR85 pKa = 11.84FIVVLLVILLLLTEE99 pKa = 4.65LFEE102 pKa = 4.6IALADD107 pKa = 4.97EE108 pKa = 4.98IDD110 pKa = 4.16CSDD113 pKa = 3.67VLIVEE118 pKa = 4.46VDD120 pKa = 3.19DD121 pKa = 3.94CTEE124 pKa = 3.92HH125 pKa = 6.36GRR127 pKa = 11.84CGGEE131 pKa = 3.81RR132 pKa = 11.84TPLGAAISDD141 pKa = 3.7AYY143 pKa = 10.93YY144 pKa = 11.23NRR146 pKa = 11.84FTT148 pKa = 4.43

Molecular weight: 16.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P6P130|A0A3P6P130_9BILA Tyrosine-protein phosphatase domain-containing protein OS=Gongylonema pulchrum OX=637853 GN=GPUH_LOCUS1469 PE=4 SV=1
MM1 pKa = 7.57IFFHH5 pKa = 6.68FLVSLFWLRR14 pKa = 11.84IHH16 pKa = 7.06IFAAKK21 pKa = 9.74IPNHH25 pKa = 6.15LLHH28 pKa = 7.22LARR31 pKa = 11.84HH32 pKa = 4.72QQQYY36 pKa = 7.97HH37 pKa = 4.32HH38 pKa = 6.95HH39 pKa = 6.85RR40 pKa = 11.84LRR42 pKa = 11.84PCFLHH47 pKa = 5.03WMSRR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84NRR55 pKa = 11.84QNRR58 pKa = 11.84GKK60 pKa = 10.61RR61 pKa = 11.84IRR63 pKa = 11.84NPRR66 pKa = 11.84KK67 pKa = 9.57RR68 pKa = 11.84KK69 pKa = 9.43LLRR72 pKa = 11.84KK73 pKa = 8.97AKK75 pKa = 9.81KK76 pKa = 9.54RR77 pKa = 11.84RR78 pKa = 11.84KK79 pKa = 8.6KK80 pKa = 8.94AQRR83 pKa = 11.84RR84 pKa = 11.84KK85 pKa = 8.62GRR87 pKa = 11.84RR88 pKa = 11.84RR89 pKa = 11.84RR90 pKa = 11.84SRR92 pKa = 11.84KK93 pKa = 9.26KK94 pKa = 8.64KK95 pKa = 7.63AQRR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84KK101 pKa = 7.09VQRR104 pKa = 11.84RR105 pKa = 11.84KK106 pKa = 8.93ARR108 pKa = 11.84KK109 pKa = 8.31RR110 pKa = 11.84RR111 pKa = 11.84RR112 pKa = 11.84GPRR115 pKa = 11.84RR116 pKa = 11.84RR117 pKa = 11.84GPRR120 pKa = 11.84KK121 pKa = 9.31RR122 pKa = 11.84GLRR125 pKa = 11.84RR126 pKa = 11.84KK127 pKa = 8.8GPKK130 pKa = 9.31RR131 pKa = 11.84RR132 pKa = 11.84VQRR135 pKa = 11.84RR136 pKa = 11.84RR137 pKa = 11.84GPRR140 pKa = 11.84RR141 pKa = 11.84KK142 pKa = 10.11GPRR145 pKa = 11.84KK146 pKa = 8.78KK147 pKa = 9.84RR148 pKa = 11.84KK149 pKa = 8.92RR150 pKa = 11.84MVRR153 pKa = 11.84RR154 pKa = 11.84RR155 pKa = 11.84KK156 pKa = 8.75LQRR159 pKa = 11.84RR160 pKa = 11.84SKK162 pKa = 9.5VSKK165 pKa = 9.78RR166 pKa = 11.84GPRR169 pKa = 11.84RR170 pKa = 11.84KK171 pKa = 9.25RR172 pKa = 11.84RR173 pKa = 11.84RR174 pKa = 11.84RR175 pKa = 11.84RR176 pKa = 11.84EE177 pKa = 3.14RR178 pKa = 11.84RR179 pKa = 11.84RR180 pKa = 11.84RR181 pKa = 11.84RR182 pKa = 11.84KK183 pKa = 9.36RR184 pKa = 11.84RR185 pKa = 11.84RR186 pKa = 11.84AGRR189 pKa = 11.84KK190 pKa = 7.51KK191 pKa = 10.22RR192 pKa = 11.84KK193 pKa = 9.35RR194 pKa = 11.84SRR196 pKa = 11.84KK197 pKa = 9.2KK198 pKa = 9.46KK199 pKa = 9.57RR200 pKa = 11.84KK201 pKa = 9.3RR202 pKa = 11.84NLKK205 pKa = 9.65RR206 pKa = 11.84KK207 pKa = 9.52RR208 pKa = 11.84SRR210 pKa = 11.84KK211 pKa = 8.64RR212 pKa = 11.84KK213 pKa = 8.77RR214 pKa = 11.84NRR216 pKa = 11.84KK217 pKa = 8.53RR218 pKa = 11.84KK219 pKa = 8.97RR220 pKa = 11.84SRR222 pKa = 11.84KK223 pKa = 8.09RR224 pKa = 11.84RR225 pKa = 11.84KK226 pKa = 8.79KK227 pKa = 8.74RR228 pKa = 11.84RR229 pKa = 11.84RR230 pKa = 11.84RR231 pKa = 11.84KK232 pKa = 8.39GRR234 pKa = 11.84KK235 pKa = 7.1RR236 pKa = 11.84KK237 pKa = 8.99KK238 pKa = 8.86RR239 pKa = 11.84RR240 pKa = 11.84RR241 pKa = 11.84GRR243 pKa = 11.84RR244 pKa = 11.84KK245 pKa = 8.64RR246 pKa = 11.84RR247 pKa = 11.84RR248 pKa = 11.84RR249 pKa = 11.84RR250 pKa = 11.84LRR252 pKa = 11.84KK253 pKa = 9.02RR254 pKa = 11.84KK255 pKa = 9.21RR256 pKa = 11.84KK257 pKa = 9.22RR258 pKa = 11.84RR259 pKa = 11.84RR260 pKa = 11.84KK261 pKa = 9.08KK262 pKa = 8.14RR263 pKa = 11.84RR264 pKa = 11.84KK265 pKa = 8.22RR266 pKa = 11.84RR267 pKa = 11.84RR268 pKa = 11.84RR269 pKa = 11.84RR270 pKa = 11.84KK271 pKa = 8.04GRR273 pKa = 11.84RR274 pKa = 11.84RR275 pKa = 11.84KK276 pKa = 9.1GRR278 pKa = 11.84KK279 pKa = 8.36RR280 pKa = 11.84SRR282 pKa = 11.84KK283 pKa = 8.29RR284 pKa = 11.84RR285 pKa = 11.84KK286 pKa = 9.07KK287 pKa = 8.29RR288 pKa = 11.84RR289 pKa = 11.84KK290 pKa = 8.04RR291 pKa = 11.84RR292 pKa = 11.84RR293 pKa = 11.84RR294 pKa = 11.84GKK296 pKa = 8.58RR297 pKa = 11.84RR298 pKa = 11.84RR299 pKa = 11.84RR300 pKa = 11.84RR301 pKa = 11.84RR302 pKa = 11.84LIRR305 pKa = 11.84TKK307 pKa = 10.93KK308 pKa = 8.81MRR310 pKa = 11.84AKK312 pKa = 10.24VKK314 pKa = 9.2VKK316 pKa = 10.47KK317 pKa = 10.3GVRR320 pKa = 11.84SCGQEE325 pKa = 3.88PEE327 pKa = 4.31GTGCNGWKK335 pKa = 10.16KK336 pKa = 10.42GIQRR340 pKa = 11.84KK341 pKa = 8.44RR342 pKa = 11.84AHH344 pKa = 6.19CTDD347 pKa = 5.58LIAVANIPLIIILEE361 pKa = 4.05KK362 pKa = 9.66MKK364 pKa = 10.67RR365 pKa = 11.84VLKK368 pKa = 10.42LAIIQCIPTHH378 pKa = 6.85AYY380 pKa = 9.67AA381 pKa = 5.4

Molecular weight: 49.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26895

0

26895

4856716

29

6632

180.6

20.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.519 ± 0.021

2.252 ± 0.013

5.258 ± 0.019

6.545 ± 0.022

4.484 ± 0.015

5.473 ± 0.026

2.37 ± 0.009

5.426 ± 0.013

5.592 ± 0.017

9.308 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.626 ± 0.01

4.126 ± 0.012

4.703 ± 0.023

4.168 ± 0.017

6.108 ± 0.016

7.952 ± 0.022

5.317 ± 0.017

6.484 ± 0.016

1.114 ± 0.006

3.03 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski