Coraliomargarita sinensis

Taxonomy: cellular organisms; Bacteria; PVC group; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2981 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A317ZDZ7|A0A317ZDZ7_9BACT Putative pre-16S rRNA nuclease OS=Coraliomargarita sinensis OX=2174842 GN=DDZ13_14855 PE=3 SV=1
MM1 pKa = 7.2QKK3 pKa = 10.13NAPICLALAVCYY15 pKa = 7.37LTWLAPLRR23 pKa = 11.84AADD26 pKa = 3.42ITFVGHH32 pKa = 5.82QDD34 pKa = 3.35AVEE37 pKa = 4.37ADD39 pKa = 3.51ADD41 pKa = 4.27TPTSGWRR48 pKa = 11.84NATPSKK54 pKa = 9.89TLDD57 pKa = 3.16IDD59 pKa = 3.51VDD61 pKa = 3.99NVLGTDD67 pKa = 4.73GYY69 pKa = 11.13QVAAKK74 pKa = 9.73SANPSYY80 pKa = 10.92GWIIRR85 pKa = 11.84RR86 pKa = 11.84SPGYY90 pKa = 10.03NHH92 pKa = 7.14ASSWGLWDD100 pKa = 5.44DD101 pKa = 4.16PDD103 pKa = 3.92NASGSDD109 pKa = 3.48NLSAGVFYY117 pKa = 10.78DD118 pKa = 4.04PNANGQVDD126 pKa = 4.02VFEE129 pKa = 4.76LVIEE133 pKa = 4.29GDD135 pKa = 3.74EE136 pKa = 4.37LVGKK140 pKa = 6.6TLRR143 pKa = 11.84VGILYY148 pKa = 10.38GVMVNGTSTFTVTQTVGGNQMVTTPSLTHH177 pKa = 7.25DD178 pKa = 3.57ATSLNAAFFNITGAVEE194 pKa = 4.1GDD196 pKa = 3.49TFRR199 pKa = 11.84ISTEE203 pKa = 3.47ILTGSGVEE211 pKa = 3.93QVGGIFLDD219 pKa = 3.91SAPTNPGTQLPEE231 pKa = 3.28VDD233 pKa = 3.24GTVRR237 pKa = 11.84GTYY240 pKa = 8.81VAPLEE245 pKa = 4.26VAGIFSDD252 pKa = 3.18NGVIQRR258 pKa = 11.84GMVVPVWGWDD268 pKa = 3.5DD269 pKa = 4.02PGTVVTVDD277 pKa = 3.8FAGQSVNGTADD288 pKa = 3.23ANGRR292 pKa = 11.84WEE294 pKa = 4.63AEE296 pKa = 4.16LLSLTANTTPQTMTISAGADD316 pKa = 2.85TVTISNLLVGDD327 pKa = 3.88VWLCSGQSNMEE338 pKa = 3.65MDD340 pKa = 4.43FNGSQYY346 pKa = 10.97AADD349 pKa = 3.94MPAFIDD355 pKa = 3.81PDD357 pKa = 3.5NFPTIRR363 pKa = 11.84HH364 pKa = 5.89IDD366 pKa = 3.24ISNAQAEE373 pKa = 4.65FRR375 pKa = 11.84QKK377 pKa = 10.76RR378 pKa = 11.84LPNGNAGWTVCDD390 pKa = 3.39STTVQDD396 pKa = 3.46YY397 pKa = 8.21TAAGFFFATTISQEE411 pKa = 3.96TGVPIGLINSTFGNSRR427 pKa = 11.84IGEE430 pKa = 4.32FVTPDD435 pKa = 3.45SIGLVTDD442 pKa = 4.09QIPASSFRR450 pKa = 11.84GVFTPDD456 pKa = 2.85PCKK459 pKa = 10.7KK460 pKa = 9.44FFAMVAPITGYY471 pKa = 11.74AMTGALWYY479 pKa = 10.41QGEE482 pKa = 4.24ANANDD487 pKa = 3.81GEE489 pKa = 4.55DD490 pKa = 4.16YY491 pKa = 10.36FWKK494 pKa = 10.47LAALFQGWRR503 pKa = 11.84DD504 pKa = 3.1EE505 pKa = 4.21WQQGDD510 pKa = 3.92FPFYY514 pKa = 10.21YY515 pKa = 10.58AQLPSFDD522 pKa = 5.1GSVSWPIIRR531 pKa = 11.84EE532 pKa = 4.08SQRR535 pKa = 11.84RR536 pKa = 11.84ALTLTNTGMATLVDD550 pKa = 3.86VGGVGLPWPEE560 pKa = 3.97NLHH563 pKa = 6.45PPNKK567 pKa = 9.44YY568 pKa = 10.09DD569 pKa = 3.13VGRR572 pKa = 11.84RR573 pKa = 11.84LAQWALLNEE582 pKa = 4.39YY583 pKa = 9.15GQSSVVPSGPLFSSAVFDD601 pKa = 4.04GANVTISFDD610 pKa = 3.77YY611 pKa = 10.97VGSGLVAAAKK621 pKa = 9.15PSPQSTDD628 pKa = 2.91APSPVADD635 pKa = 3.31VLGFEE640 pKa = 4.79LAGSDD645 pKa = 4.24EE646 pKa = 4.33VWHH649 pKa = 6.6AANASIAGSTVVLSSASVPNPEE671 pKa = 3.97AARR674 pKa = 11.84YY675 pKa = 9.18LYY677 pKa = 9.26ATNTDD682 pKa = 3.44GGTLYY687 pKa = 11.0NLEE690 pKa = 5.11DD691 pKa = 3.8LPAAPFLTTAADD703 pKa = 3.9NPNPPSTPTGLNATSGDD720 pKa = 3.48GRR722 pKa = 11.84VDD724 pKa = 4.15LAWDD728 pKa = 3.71AATGADD734 pKa = 3.58SYY736 pKa = 11.26NVKK739 pKa = 10.43RR740 pKa = 11.84STTTGGPYY748 pKa = 10.58ASIGSPSGTSYY759 pKa = 12.01ADD761 pKa = 3.15TTAANGTTYY770 pKa = 10.38YY771 pKa = 10.83YY772 pKa = 11.13VVAAVNTIGSSADD785 pKa = 3.36STEE788 pKa = 4.21VSATPVEE795 pKa = 4.52ATNPPDD801 pKa = 3.85APTGLSATPGDD812 pKa = 3.78NRR814 pKa = 11.84VDD816 pKa = 4.2LSWSASSGADD826 pKa = 2.95SYY828 pKa = 11.44NVKK831 pKa = 10.36RR832 pKa = 11.84STTMGGPYY840 pKa = 9.81SGIGTTPGISYY851 pKa = 10.13TDD853 pKa = 3.84LSATNGTTYY862 pKa = 10.69YY863 pKa = 10.56YY864 pKa = 10.83VVSASNTYY872 pKa = 10.6GNSADD877 pKa = 3.75SAEE880 pKa = 4.4ASATPQEE887 pKa = 4.32PAAGAVITYY896 pKa = 9.72VGHH899 pKa = 6.42QDD901 pKa = 3.45NVDD904 pKa = 3.5AKK906 pKa = 10.12TDD908 pKa = 3.72DD909 pKa = 3.88PTSGWRR915 pKa = 11.84NTTPAKK921 pKa = 9.78THH923 pKa = 7.22DD924 pKa = 3.6IDD926 pKa = 4.58GDD928 pKa = 4.16NILGTDD934 pKa = 4.47GYY936 pKa = 11.88AMFRR940 pKa = 11.84NNSAFSVVSLPSYY953 pKa = 10.18ISAVTHH959 pKa = 6.41VSTHH963 pKa = 5.65SNANASFGVMDD974 pKa = 4.63NPSDD978 pKa = 3.75PSGSDD983 pKa = 3.61DD984 pKa = 3.25INYY987 pKa = 9.25GLWYY991 pKa = 9.02LTTTGGTTDD1000 pKa = 3.18VFTFTITGTDD1010 pKa = 3.44LDD1012 pKa = 4.33GKK1014 pKa = 6.76TLRR1017 pKa = 11.84VGLAYY1022 pKa = 10.3DD1023 pKa = 4.88GYY1025 pKa = 10.86NGSGNQQLTITQTAGGAAADD1045 pKa = 3.83NSGTVSWGNDD1055 pKa = 2.85GLDD1058 pKa = 3.35FVFFDD1063 pKa = 3.3ITEE1066 pKa = 4.23VNDD1069 pKa = 3.53GDD1071 pKa = 4.26VFTVNASAGAGLPHH1085 pKa = 6.46VSGVTFDD1092 pKa = 4.32VITDD1096 pKa = 3.62IATPPGTPTGLAATPGDD1113 pKa = 3.9GQVDD1117 pKa = 4.21LTWNVSSGAASYY1129 pKa = 10.21NVKK1132 pKa = 10.43RR1133 pKa = 11.84GTAEE1137 pKa = 4.01GGPYY1141 pKa = 8.85STVASPTTNSFSDD1154 pKa = 3.6STVSNGTTYY1163 pKa = 10.73YY1164 pKa = 10.58YY1165 pKa = 10.9VVSAVNAEE1173 pKa = 4.19GEE1175 pKa = 4.5SPDD1178 pKa = 3.8SGEE1181 pKa = 5.04ASATPQALPPDD1192 pKa = 4.27APTGLVATPGDD1203 pKa = 3.99GQVDD1207 pKa = 4.5LSWDD1211 pKa = 3.46ASSGADD1217 pKa = 3.08SYY1219 pKa = 11.35NVKK1222 pKa = 10.28RR1223 pKa = 11.84GTSMGGPYY1231 pKa = 9.0STVASPNNNSLTDD1244 pKa = 3.54ATVSNGTTYY1253 pKa = 10.73YY1254 pKa = 10.58YY1255 pKa = 10.86VVSAVNTNGEE1265 pKa = 4.34SGNSGEE1271 pKa = 5.07VSATPQAAPTGATISYY1287 pKa = 9.94VGNQTNVEE1295 pKa = 4.34TEE1297 pKa = 3.78ASDD1300 pKa = 5.22AGIGWRR1306 pKa = 11.84NTTPDD1311 pKa = 3.75KK1312 pKa = 11.11PLDD1315 pKa = 3.58IDD1317 pKa = 3.95GDD1319 pKa = 4.29NILGTDD1325 pKa = 4.41GYY1327 pKa = 11.14RR1328 pKa = 11.84IFNDD1332 pKa = 3.55GSTVSLPSYY1341 pKa = 9.85IDD1343 pKa = 4.33NITKK1347 pKa = 10.22IAPNAAKK1354 pKa = 10.44SGGWGVIDD1362 pKa = 5.7DD1363 pKa = 4.82PSDD1366 pKa = 3.48PSGTDD1371 pKa = 3.69DD1372 pKa = 4.42IIHH1375 pKa = 6.12GFWYY1379 pKa = 10.08DD1380 pKa = 3.07SGNAQGSVDD1389 pKa = 3.26ILSFQITGTALDD1401 pKa = 4.19GQTLRR1406 pKa = 11.84IGIIYY1411 pKa = 7.63DD1412 pKa = 3.72THH1414 pKa = 6.66WGTGDD1419 pKa = 3.0IAFTLTQNGTSGSVTATSGLVTAGSDD1445 pKa = 3.75GIDD1448 pKa = 3.12VVFFDD1453 pKa = 4.64LTNVSSGDD1461 pKa = 3.76VFTLNADD1468 pKa = 3.65ADD1470 pKa = 4.0DD1471 pKa = 5.09HH1472 pKa = 6.38NFSHH1476 pKa = 7.23AGGITFDD1483 pKa = 3.52TSVISGGDD1491 pKa = 3.43TLADD1495 pKa = 3.2WLASPEE1501 pKa = 4.26FGLDD1505 pKa = 3.56PADD1508 pKa = 3.94QDD1510 pKa = 5.15FGDD1513 pKa = 4.93DD1514 pKa = 3.78PDD1516 pKa = 6.15GDD1518 pKa = 3.63GHH1520 pKa = 7.71ANGIEE1525 pKa = 4.41NYY1527 pKa = 10.05FGTHH1531 pKa = 6.45PGEE1534 pKa = 4.34FSQGLVSGTVSGDD1547 pKa = 2.96SMTFTHH1553 pKa = 7.16PLSDD1557 pKa = 3.96SPAADD1562 pKa = 2.99ISAVYY1567 pKa = 9.68RR1568 pKa = 11.84WSKK1571 pKa = 11.06DD1572 pKa = 2.92LDD1574 pKa = 3.88SFHH1577 pKa = 8.1VDD1579 pKa = 2.95GDD1581 pKa = 4.17SFDD1584 pKa = 3.73NTTVTFSQGTPADD1597 pKa = 3.48GMVEE1601 pKa = 3.82VTAAITGDD1609 pKa = 3.87PLDD1612 pKa = 4.14KK1613 pKa = 10.91LFVDD1617 pKa = 4.9IEE1619 pKa = 4.45VTQPP1623 pKa = 2.93

Molecular weight: 168.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A317ZD97|A0A317ZD97_9BACT Cytochrome oxidase assembly protein OS=Coraliomargarita sinensis OX=2174842 GN=DDZ13_13100 PE=4 SV=1
MM1 pKa = 7.59GNLKK5 pKa = 10.05KK6 pKa = 10.3KK7 pKa = 10.32RR8 pKa = 11.84RR9 pKa = 11.84LKK11 pKa = 9.51MNKK14 pKa = 8.33HH15 pKa = 5.49KK16 pKa = 10.35RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.17RR20 pKa = 11.84LKK22 pKa = 9.94SNRR25 pKa = 11.84HH26 pKa = 5.57KK27 pKa = 10.88KK28 pKa = 8.44RR29 pKa = 11.84TWW31 pKa = 2.8

Molecular weight: 4.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2981

0

2981

1056829

15

5145

354.5

39.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.111 ± 0.049

1.019 ± 0.018

6.035 ± 0.055

7.15 ± 0.056

4.201 ± 0.03

7.778 ± 0.054

2.106 ± 0.028

5.691 ± 0.04

4.803 ± 0.066

9.752 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.18 ± 0.025

3.593 ± 0.036

4.712 ± 0.03

3.405 ± 0.028

5.716 ± 0.057

6.443 ± 0.051

5.301 ± 0.075

6.584 ± 0.04

1.405 ± 0.021

3.015 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski