Otariodibacter oris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Otariodibacter

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1851 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A420XEN3|A0A420XEN3_9PAST Fumarate reductase subunit C OS=Otariodibacter oris OX=1032623 GN=frdC PE=3 SV=1
MM1 pKa = 7.28MSDD4 pKa = 2.95INVPIIFTDD13 pKa = 3.69AAANKK18 pKa = 9.16VKK20 pKa = 10.76SLIEE24 pKa = 4.5GEE26 pKa = 4.46DD27 pKa = 3.6NPNLRR32 pKa = 11.84LRR34 pKa = 11.84VYY36 pKa = 9.12ITGGGCSGFQYY47 pKa = 10.95GFTFDD52 pKa = 3.74EE53 pKa = 4.36QVNDD57 pKa = 3.56GDD59 pKa = 4.79LTIEE63 pKa = 4.06NQNVGLVVDD72 pKa = 4.64PMSLQYY78 pKa = 11.06LIGGTVDD85 pKa = 3.54YY86 pKa = 11.18IEE88 pKa = 4.62GLEE91 pKa = 4.0GSRR94 pKa = 11.84FIVNNPNASSTCGCGSSFSVV114 pKa = 3.54

Molecular weight: 12.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A420XEW1|A0A420XEW1_9PAST Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase OS=Otariodibacter oris OX=1032623 GN=wecA PE=3 SV=1
MM1 pKa = 7.25ATINQLVRR9 pKa = 11.84KK10 pKa = 8.51PRR12 pKa = 11.84VKK14 pKa = 10.37KK15 pKa = 9.78VVKK18 pKa = 10.54SNVPALEE25 pKa = 4.21ACPQKK30 pKa = 10.67RR31 pKa = 11.84GVCTRR36 pKa = 11.84VYY38 pKa = 7.93TTTPKK43 pKa = 10.54KK44 pKa = 10.26PNSALRR50 pKa = 11.84KK51 pKa = 7.41VCRR54 pKa = 11.84IRR56 pKa = 11.84LTNGFEE62 pKa = 3.94VTSYY66 pKa = 10.74IGGEE70 pKa = 3.94GHH72 pKa = 6.6NLQEE76 pKa = 4.28HH77 pKa = 5.6SVVLIRR83 pKa = 11.84GGRR86 pKa = 11.84VKK88 pKa = 10.7DD89 pKa = 3.73LPGVRR94 pKa = 11.84YY95 pKa = 8.04HH96 pKa = 5.83TVRR99 pKa = 11.84GALDD103 pKa = 3.4CAGVKK108 pKa = 9.53DD109 pKa = 4.11RR110 pKa = 11.84KK111 pKa = 8.34QARR114 pKa = 11.84SKK116 pKa = 11.29YY117 pKa = 8.59GVKK120 pKa = 10.11RR121 pKa = 11.84PKK123 pKa = 10.41SS124 pKa = 3.41

Molecular weight: 13.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1851

0

1851

589099

30

1621

318.3

35.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.687 ± 0.061

0.898 ± 0.018

5.315 ± 0.04

6.559 ± 0.054

4.481 ± 0.04

6.574 ± 0.052

1.999 ± 0.028

7.427 ± 0.053

6.344 ± 0.052

10.361 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.365 ± 0.028

4.878 ± 0.052

3.737 ± 0.033

4.547 ± 0.049

4.303 ± 0.046

6.257 ± 0.049

5.184 ± 0.038

6.626 ± 0.048

1.147 ± 0.021

3.311 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski