Tenacibaculum sp. KUL118

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tenacibaculum; unclassified Tenacibaculum

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6803 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A640Q3I3|A0A640Q3I3_9FLAO Membrane protein OS=Tenacibaculum sp. KUL118 OX=2480802 GN=KUL118_41580 PE=3 SV=1
MM1 pKa = 7.74SDD3 pKa = 3.06SALSIGLFYY12 pKa = 11.16GSTTCYY18 pKa = 10.67TEE20 pKa = 3.71MAAEE24 pKa = 5.15KK25 pKa = 10.23IQAQLNSLFDD35 pKa = 3.95EE36 pKa = 5.26NIVEE40 pKa = 3.9LHH42 pKa = 6.22NIKK45 pKa = 10.46DD46 pKa = 3.71VSLSRR51 pKa = 11.84TADD54 pKa = 3.15YY55 pKa = 11.03DD56 pKa = 3.69IIIFGISTWDD66 pKa = 3.43FGEE69 pKa = 4.3LQEE72 pKa = 5.04DD73 pKa = 4.5WEE75 pKa = 4.76SHH77 pKa = 4.89WEE79 pKa = 4.11DD80 pKa = 3.59VHH82 pKa = 9.11SLDD85 pKa = 5.8LSGKK89 pKa = 7.97TIALFGLGDD98 pKa = 3.5QLGYY102 pKa = 11.04GEE104 pKa = 4.72WFQDD108 pKa = 3.69ALGMLHH114 pKa = 7.44DD115 pKa = 6.17AILPSGCNVVGYY127 pKa = 8.9WPNEE131 pKa = 3.99GYY133 pKa = 10.9EE134 pKa = 4.26FTASKK139 pKa = 11.01ALTEE143 pKa = 4.52DD144 pKa = 3.38RR145 pKa = 11.84SQFVGLSLDD154 pKa = 5.49DD155 pKa = 3.93EE156 pKa = 4.39NQYY159 pKa = 11.8DD160 pKa = 3.7KK161 pKa = 11.34TDD163 pKa = 3.17ARR165 pKa = 11.84IEE167 pKa = 4.07AWCEE171 pKa = 3.52QLLVSLAA178 pKa = 3.54

Molecular weight: 19.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A640PYJ0|A0A640PYJ0_9FLAO TonB-dependent receptor OS=Tenacibaculum sp. KUL118 OX=2480802 GN=KUL118_24030 PE=3 SV=1
MM1 pKa = 7.73EE2 pKa = 5.53YY3 pKa = 10.13IFGFIIQIAGIMLLAKK19 pKa = 10.31LSWSLLRR26 pKa = 11.84LLARR30 pKa = 11.84QSVRR34 pKa = 11.84PFRR37 pKa = 11.84FVFTQIKK44 pKa = 10.23RR45 pKa = 11.84LFTPTPKK52 pKa = 9.72RR53 pKa = 11.84RR54 pKa = 11.84PMAVPKK60 pKa = 10.52APGMPRR66 pKa = 11.84LTSAFYY72 pKa = 10.61KK73 pKa = 10.48EE74 pKa = 3.67PHH76 pKa = 6.1QYY78 pKa = 11.64DD79 pKa = 3.46MALLEE84 pKa = 4.31IPTYY88 pKa = 10.64LRR90 pKa = 11.84RR91 pKa = 11.84QSSLPSRR98 pKa = 11.84VEE100 pKa = 3.68ATVCTEE106 pKa = 3.94FNN108 pKa = 3.45

Molecular weight: 12.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6803

0

6803

2271612

40

3581

333.9

37.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.654 ± 0.036

0.831 ± 0.009

5.593 ± 0.021

6.669 ± 0.027

4.646 ± 0.022

6.487 ± 0.028

1.999 ± 0.015

6.905 ± 0.026

6.819 ± 0.042

9.536 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.289 ± 0.014

5.395 ± 0.029

3.588 ± 0.016

3.777 ± 0.021

3.997 ± 0.023

6.666 ± 0.026

5.756 ± 0.025

6.752 ± 0.024

1.112 ± 0.01

3.527 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski