Amino acid dipepetide frequency for Citrus leprosis virus C (isolate Citrus sinesis/Brazil/Cordeiropolis/2003) (CiLV-C)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.302AlaAla: 4.302 ± 2.123
1.265AlaCys: 1.265 ± 0.609
3.543AlaAsp: 3.543 ± 0.73
3.543AlaGlu: 3.543 ± 1.91
1.012AlaPhe: 1.012 ± 0.882
3.036AlaGly: 3.036 ± 0.946
1.265AlaHis: 1.265 ± 0.626
3.543AlaIle: 3.543 ± 0.975
3.543AlaLys: 3.543 ± 2.429
4.555AlaLeu: 4.555 ± 1.845
0.506AlaMet: 0.506 ± 0.309
1.518AlaAsn: 1.518 ± 1.681
1.012AlaPro: 1.012 ± 0.396
1.012AlaGln: 1.012 ± 1.397
3.289AlaArg: 3.289 ± 1.039
3.036AlaSer: 3.036 ± 0.886
1.771AlaThr: 1.771 ± 0.493
5.82AlaVal: 5.82 ± 1.197
1.012AlaTrp: 1.012 ± 0.375
1.771AlaTyr: 1.771 ± 0.913
0.0AlaXaa: 0.0 ± 0.0
Cys
1.265CysAla: 1.265 ± 0.687
1.012CysCys: 1.012 ± 0.617
3.289CysAsp: 3.289 ± 1.134
0.759CysGlu: 0.759 ± 0.409
1.518CysPhe: 1.518 ± 0.68
1.771CysGly: 1.771 ± 0.69
0.253CysHis: 0.253 ± 0.136
1.518CysIle: 1.518 ± 0.477
0.759CysLys: 0.759 ± 0.315
3.796CysLeu: 3.796 ± 1.577
1.012CysMet: 1.012 ± 0.545
1.265CysAsn: 1.265 ± 0.964
1.265CysPro: 1.265 ± 0.371
0.253CysGln: 0.253 ± 0.136
1.012CysArg: 1.012 ± 0.617
1.771CysSer: 1.771 ± 0.679
1.265CysThr: 1.265 ± 0.609
2.024CysVal: 2.024 ± 0.415
0.0CysTrp: 0.0 ± 0.0
1.265CysTyr: 1.265 ± 0.47
0.0CysXaa: 0.0 ± 0.0
Asp
2.783AspAla: 2.783 ± 0.536
2.53AspCys: 2.53 ± 1.059
5.061AspAsp: 5.061 ± 0.554
3.543AspGlu: 3.543 ± 1.636
4.049AspPhe: 4.049 ± 0.865
3.289AspGly: 3.289 ± 1.304
1.518AspHis: 1.518 ± 0.556
5.314AspIle: 5.314 ± 1.019
4.555AspLys: 4.555 ± 0.794
8.35AspLeu: 8.35 ± 1.161
1.265AspMet: 1.265 ± 0.398
1.518AspAsn: 1.518 ± 0.729
3.543AspPro: 3.543 ± 0.623
1.265AspGln: 1.265 ± 0.341
3.036AspArg: 3.036 ± 0.573
6.073AspSer: 6.073 ± 1.21
2.024AspThr: 2.024 ± 0.553
5.061AspVal: 5.061 ± 1.167
0.253AspTrp: 0.253 ± 0.136
2.024AspTyr: 2.024 ± 0.488
0.0AspXaa: 0.0 ± 0.0
Glu
3.543GluAla: 3.543 ± 0.888
1.012GluCys: 1.012 ± 0.826
2.783GluAsp: 2.783 ± 1.222
4.049GluGlu: 4.049 ± 0.764
3.036GluPhe: 3.036 ± 0.752
2.024GluGly: 2.024 ± 0.553
1.012GluHis: 1.012 ± 0.375
2.53GluIle: 2.53 ± 0.748
4.302GluLys: 4.302 ± 1.49
3.543GluLeu: 3.543 ± 0.583
1.265GluMet: 1.265 ± 0.676
1.518GluAsn: 1.518 ± 0.477
1.265GluPro: 1.265 ± 0.491
0.759GluGln: 0.759 ± 0.629
3.543GluArg: 3.543 ± 1.126
3.796GluSer: 3.796 ± 0.948
2.783GluThr: 2.783 ± 0.935
5.314GluVal: 5.314 ± 1.039
0.759GluTrp: 0.759 ± 0.859
3.036GluTyr: 3.036 ± 0.988
0.0GluXaa: 0.0 ± 0.0
Phe
2.277PheAla: 2.277 ± 0.977
2.024PheCys: 2.024 ± 0.823
2.783PheAsp: 2.783 ± 1.044
3.289PheGlu: 3.289 ± 0.727
1.771PhePhe: 1.771 ± 0.633
3.036PheGly: 3.036 ± 0.898
1.012PheHis: 1.012 ± 0.675
5.314PheIle: 5.314 ± 2.524
3.796PheLys: 3.796 ± 0.504
5.82PheLeu: 5.82 ± 1.261
0.759PheMet: 0.759 ± 0.409
1.771PheAsn: 1.771 ± 0.954
2.783PhePro: 2.783 ± 1.016
0.759PheGln: 0.759 ± 0.655
4.555PheArg: 4.555 ± 1.113
5.567PheSer: 5.567 ± 1.702
2.783PheThr: 2.783 ± 0.485
4.049PheVal: 4.049 ± 0.974
0.253PheTrp: 0.253 ± 0.559
2.277PheTyr: 2.277 ± 0.81
0.0PheXaa: 0.0 ± 0.0
Gly
2.024GlyAla: 2.024 ± 1.075
1.518GlyCys: 1.518 ± 0.68
3.036GlyAsp: 3.036 ± 0.752
1.518GlyGlu: 1.518 ± 0.631
4.555GlyPhe: 4.555 ± 1.57
3.036GlyGly: 3.036 ± 0.87
0.759GlyHis: 0.759 ± 0.315
4.049GlyIle: 4.049 ± 0.812
2.277GlyLys: 2.277 ± 0.951
4.302GlyLeu: 4.302 ± 0.962
1.518GlyMet: 1.518 ± 0.448
2.024GlyAsn: 2.024 ± 0.823
1.265GlyPro: 1.265 ± 0.85
1.265GlyGln: 1.265 ± 0.609
3.289GlyArg: 3.289 ± 1.263
3.543GlySer: 3.543 ± 0.693
2.783GlyThr: 2.783 ± 0.717
2.53GlyVal: 2.53 ± 0.593
0.0GlyTrp: 0.0 ± 0.0
3.543GlyTyr: 3.543 ± 1.46
0.0GlyXaa: 0.0 ± 0.0
His
1.012HisAla: 1.012 ± 0.357
1.265HisCys: 1.265 ± 0.491
2.53HisAsp: 2.53 ± 0.87
1.012HisGlu: 1.012 ± 0.377
1.518HisPhe: 1.518 ± 0.579
0.506HisGly: 0.506 ± 0.273
1.265HisHis: 1.265 ± 0.341
2.024HisIle: 2.024 ± 0.948
0.506HisLys: 0.506 ± 0.309
1.771HisLeu: 1.771 ± 0.98
0.506HisMet: 0.506 ± 0.309
2.024HisAsn: 2.024 ± 0.488
1.771HisPro: 1.771 ± 1.061
0.506HisGln: 0.506 ± 0.273
1.771HisArg: 1.771 ± 0.831
3.543HisSer: 3.543 ± 0.735
0.759HisThr: 0.759 ± 0.409
2.277HisVal: 2.277 ± 0.869
0.0HisTrp: 0.0 ± 0.0
1.012HisTyr: 1.012 ± 0.377
0.0HisXaa: 0.0 ± 0.0
Ile
3.796IleAla: 3.796 ± 0.665
1.265IleCys: 1.265 ± 0.619
4.555IleAsp: 4.555 ± 1.606
2.783IleGlu: 2.783 ± 1.025
3.289IlePhe: 3.289 ± 1.354
3.289IleGly: 3.289 ± 1.332
1.265IleHis: 1.265 ± 0.491
3.036IleIle: 3.036 ± 1.309
3.289IleLys: 3.289 ± 0.886
5.061IleLeu: 5.061 ± 1.114
2.024IleMet: 2.024 ± 1.251
3.036IleAsn: 3.036 ± 0.542
3.796IlePro: 3.796 ± 0.407
2.277IleGln: 2.277 ± 0.844
3.036IleArg: 3.036 ± 0.932
5.314IleSer: 5.314 ± 1.73
4.049IleThr: 4.049 ± 1.059
6.579IleVal: 6.579 ± 0.84
0.506IleTrp: 0.506 ± 0.273
3.036IleTyr: 3.036 ± 0.83
0.0IleXaa: 0.0 ± 0.0
Lys
4.555LysAla: 4.555 ± 0.823
1.012LysCys: 1.012 ± 0.485
4.555LysAsp: 4.555 ± 1.404
0.759LysGlu: 0.759 ± 0.409
4.302LysPhe: 4.302 ± 2.317
3.289LysGly: 3.289 ± 1.013
1.265LysHis: 1.265 ± 1.213
2.53LysIle: 2.53 ± 0.362
2.53LysLys: 2.53 ± 1.282
5.82LysLeu: 5.82 ± 0.896
0.759LysMet: 0.759 ± 0.478
2.53LysAsn: 2.53 ± 0.983
4.302LysPro: 4.302 ± 0.977
2.783LysGln: 2.783 ± 1.684
3.289LysArg: 3.289 ± 0.559
4.808LysSer: 4.808 ± 0.819
2.53LysThr: 2.53 ± 1.387
5.314LysVal: 5.314 ± 1.849
0.506LysTrp: 0.506 ± 0.273
3.036LysTyr: 3.036 ± 1.072
0.0LysXaa: 0.0 ± 0.0
Leu
4.555LeuAla: 4.555 ± 1.758
3.036LeuCys: 3.036 ± 1.157
5.82LeuAsp: 5.82 ± 1.874
4.302LeuGlu: 4.302 ± 1.457
3.543LeuPhe: 3.543 ± 1.046
3.543LeuGly: 3.543 ± 1.774
2.783LeuHis: 2.783 ± 1.164
5.061LeuIle: 5.061 ± 1.019
5.82LeuLys: 5.82 ± 1.609
7.844LeuLeu: 7.844 ± 1.689
1.265LeuMet: 1.265 ± 0.578
5.314LeuAsn: 5.314 ± 1.232
2.277LeuPro: 2.277 ± 1.003
2.277LeuGln: 2.277 ± 1.123
6.073LeuArg: 6.073 ± 1.634
8.603LeuSer: 8.603 ± 1.279
5.82LeuThr: 5.82 ± 0.916
9.109LeuVal: 9.109 ± 1.088
0.253LeuTrp: 0.253 ± 0.505
2.783LeuTyr: 2.783 ± 0.67
0.0LeuXaa: 0.0 ± 0.0
Met
0.759MetAla: 0.759 ± 0.518
0.506MetCys: 0.506 ± 0.273
1.771MetAsp: 1.771 ± 0.467
2.024MetGlu: 2.024 ± 0.553
1.265MetPhe: 1.265 ± 0.567
1.012MetGly: 1.012 ± 0.898
0.759MetHis: 0.759 ± 0.315
1.518MetIle: 1.518 ± 0.311
1.265MetLys: 1.265 ± 0.609
2.783MetLeu: 2.783 ± 0.848
0.0MetMet: 0.0 ± 0.0
0.253MetAsn: 0.253 ± 0.505
0.506MetPro: 0.506 ± 0.309
0.759MetGln: 0.759 ± 0.331
1.265MetArg: 1.265 ± 0.47
0.759MetSer: 0.759 ± 0.428
0.506MetThr: 0.506 ± 0.315
1.265MetVal: 1.265 ± 0.682
0.0MetTrp: 0.0 ± 0.0
1.012MetTyr: 1.012 ± 0.506
0.0MetXaa: 0.0 ± 0.0
Asn
1.771AsnAla: 1.771 ± 0.5
0.759AsnCys: 0.759 ± 0.821
2.277AsnAsp: 2.277 ± 0.931
2.024AsnGlu: 2.024 ± 0.901
2.024AsnPhe: 2.024 ± 1.013
3.036AsnGly: 3.036 ± 0.67
1.012AsnHis: 1.012 ± 0.375
4.302AsnIle: 4.302 ± 0.944
3.036AsnLys: 3.036 ± 0.775
2.783AsnLeu: 2.783 ± 1.165
0.506AsnMet: 0.506 ± 0.397
2.277AsnAsn: 2.277 ± 1.331
0.253AsnPro: 0.253 ± 0.136
1.518AsnGln: 1.518 ± 0.4
2.53AsnArg: 2.53 ± 0.85
3.543AsnSer: 3.543 ± 0.834
2.53AsnThr: 2.53 ± 0.867
4.555AsnVal: 4.555 ± 1.323
0.506AsnTrp: 0.506 ± 0.5
2.277AsnTyr: 2.277 ± 0.82
0.0AsnXaa: 0.0 ± 0.0
Pro
1.265ProAla: 1.265 ± 0.523
1.012ProCys: 1.012 ± 0.417
3.036ProAsp: 3.036 ± 1.053
1.518ProGlu: 1.518 ± 0.413
1.265ProPhe: 1.265 ± 0.609
1.265ProGly: 1.265 ± 0.631
0.506ProHis: 0.506 ± 0.273
2.783ProIle: 2.783 ± 1.686
3.543ProLys: 3.543 ± 1.222
3.036ProLeu: 3.036 ± 1.462
0.253ProMet: 0.253 ± 0.355
3.036ProAsn: 3.036 ± 1.063
0.759ProPro: 0.759 ± 0.331
1.518ProGln: 1.518 ± 1.027
1.012ProArg: 1.012 ± 0.545
3.036ProSer: 3.036 ± 0.542
2.53ProThr: 2.53 ± 0.874
3.796ProVal: 3.796 ± 1.491
0.0ProTrp: 0.0 ± 0.0
1.771ProTyr: 1.771 ± 0.933
0.0ProXaa: 0.0 ± 0.0
Gln
1.518GlnAla: 1.518 ± 0.818
1.771GlnCys: 1.771 ± 0.698
1.012GlnAsp: 1.012 ± 0.583
1.012GlnGlu: 1.012 ± 0.357
1.518GlnPhe: 1.518 ± 0.554
0.506GlnGly: 0.506 ± 0.273
1.265GlnHis: 1.265 ± 0.553
2.277GlnIle: 2.277 ± 1.529
2.277GlnLys: 2.277 ± 1.238
4.049GlnLeu: 4.049 ± 1.485
0.253GlnMet: 0.253 ± 0.324
1.012GlnAsn: 1.012 ± 0.545
0.506GlnPro: 0.506 ± 0.71
2.024GlnGln: 2.024 ± 1.425
1.771GlnArg: 1.771 ± 1.431
1.265GlnSer: 1.265 ± 1.059
1.265GlnThr: 1.265 ± 0.47
1.771GlnVal: 1.771 ± 0.633
0.253GlnTrp: 0.253 ± 0.136
0.759GlnTyr: 0.759 ± 0.364
0.0GlnXaa: 0.0 ± 0.0
Arg
1.771ArgAla: 1.771 ± 0.941
0.759ArgCys: 0.759 ± 0.409
3.543ArgAsp: 3.543 ± 0.829
3.796ArgGlu: 3.796 ± 1.027
3.543ArgPhe: 3.543 ± 0.655
1.771ArgGly: 1.771 ± 0.539
1.518ArgHis: 1.518 ± 0.613
2.53ArgIle: 2.53 ± 1.027
3.796ArgLys: 3.796 ± 0.948
6.326ArgLeu: 6.326 ± 1.193
1.012ArgMet: 1.012 ± 0.375
2.024ArgAsn: 2.024 ± 0.86
1.771ArgPro: 1.771 ± 0.643
2.024ArgGln: 2.024 ± 1.55
3.036ArgArg: 3.036 ± 1.111
6.073ArgSer: 6.073 ± 1.445
2.783ArgThr: 2.783 ± 0.638
4.049ArgVal: 4.049 ± 1.273
0.506ArgTrp: 0.506 ± 0.273
2.53ArgTyr: 2.53 ± 0.77
0.0ArgXaa: 0.0 ± 0.0
Ser
3.543SerAla: 3.543 ± 0.797
1.771SerCys: 1.771 ± 1.052
5.567SerAsp: 5.567 ± 1.011
6.073SerGlu: 6.073 ± 2.589
6.073SerPhe: 6.073 ± 1.422
5.82SerGly: 5.82 ± 2.187
3.036SerHis: 3.036 ± 0.67
6.326SerIle: 6.326 ± 0.874
3.543SerLys: 3.543 ± 1.178
6.073SerLeu: 6.073 ± 1.556
1.518SerMet: 1.518 ± 0.413
4.302SerAsn: 4.302 ± 0.922
2.53SerPro: 2.53 ± 0.623
1.771SerGln: 1.771 ± 0.591
3.543SerArg: 3.543 ± 0.281
6.326SerSer: 6.326 ± 1.397
6.832SerThr: 6.832 ± 2.175
5.82SerVal: 5.82 ± 0.967
0.253SerTrp: 0.253 ± 0.136
2.277SerTyr: 2.277 ± 0.946
0.0SerXaa: 0.0 ± 0.0
Thr
2.024ThrAla: 2.024 ± 0.69
0.506ThrCys: 0.506 ± 0.273
2.783ThrAsp: 2.783 ± 0.422
3.289ThrGlu: 3.289 ± 1.19
4.049ThrPhe: 4.049 ± 0.537
1.265ThrGly: 1.265 ± 1.315
2.783ThrHis: 2.783 ± 1.431
3.036ThrIle: 3.036 ± 0.933
4.555ThrLys: 4.555 ± 1.463
4.808ThrLeu: 4.808 ± 1.271
1.265ThrMet: 1.265 ± 0.513
1.265ThrAsn: 1.265 ± 0.899
1.265ThrPro: 1.265 ± 0.871
1.012ThrGln: 1.012 ± 0.396
2.53ThrArg: 2.53 ± 1.098
4.049ThrSer: 4.049 ± 2.032
4.555ThrThr: 4.555 ± 1.147
4.555ThrVal: 4.555 ± 1.399
0.253ThrTrp: 0.253 ± 0.136
2.53ThrTyr: 2.53 ± 0.821
0.0ThrXaa: 0.0 ± 0.0
Val
4.049ValAla: 4.049 ± 1.46
2.783ValCys: 2.783 ± 0.771
5.567ValAsp: 5.567 ± 1.163
4.555ValGlu: 4.555 ± 1.319
5.567ValPhe: 5.567 ± 1.347
4.808ValGly: 4.808 ± 1.185
3.036ValHis: 3.036 ± 0.573
5.061ValIle: 5.061 ± 1.231
3.796ValLys: 3.796 ± 1.035
6.832ValLeu: 6.832 ± 1.043
2.024ValMet: 2.024 ± 0.553
4.808ValAsn: 4.808 ± 1.609
5.061ValPro: 5.061 ± 1.211
2.53ValGln: 2.53 ± 1.081
3.036ValArg: 3.036 ± 0.969
6.832ValSer: 6.832 ± 1.36
3.796ValThr: 3.796 ± 1.539
9.362ValVal: 9.362 ± 1.83
0.253ValTrp: 0.253 ± 0.136
3.036ValTyr: 3.036 ± 0.801
0.0ValXaa: 0.0 ± 0.0
Trp
0.253TrpAla: 0.253 ± 0.533
0.0TrpCys: 0.0 ± 0.0
0.506TrpAsp: 0.506 ± 0.5
0.506TrpGlu: 0.506 ± 0.273
0.759TrpPhe: 0.759 ± 0.315
0.253TrpGly: 0.253 ± 0.136
0.0TrpHis: 0.0 ± 0.0
0.506TrpIle: 0.506 ± 0.273
0.0TrpLys: 0.0 ± 0.0
0.506TrpLeu: 0.506 ± 0.273
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.253TrpGln: 0.253 ± 0.559
0.506TrpArg: 0.506 ± 0.419
0.506TrpSer: 0.506 ± 0.5
0.0TrpThr: 0.0 ± 0.0
0.253TrpVal: 0.253 ± 0.136
0.0TrpTrp: 0.0 ± 0.0
1.012TrpTyr: 1.012 ± 0.617
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.289TyrAla: 3.289 ± 1.591
1.265TyrCys: 1.265 ± 0.609
3.036TyrAsp: 3.036 ± 0.895
1.518TyrGlu: 1.518 ± 0.631
2.024TyrPhe: 2.024 ± 0.553
2.277TyrGly: 2.277 ± 0.736
1.265TyrHis: 1.265 ± 0.533
2.024TyrIle: 2.024 ± 1.306
3.289TyrLys: 3.289 ± 0.46
2.024TyrLeu: 2.024 ± 0.553
2.024TyrMet: 2.024 ± 0.75
2.277TyrAsn: 2.277 ± 0.509
1.012TyrPro: 1.012 ± 0.375
1.518TyrGln: 1.518 ± 0.413
3.036TyrArg: 3.036 ± 1.345
4.555TyrSer: 4.555 ± 2.674
1.012TyrThr: 1.012 ± 0.375
3.289TyrVal: 3.289 ± 1.21
0.253TyrTrp: 0.253 ± 0.358
2.024TyrTyr: 2.024 ± 0.613
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (3953 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski