Seonamhaeicola sp. S2-3

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Seonamhaeicola; unclassified Seonamhaeicola

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3101 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1U7DT73|A0A1U7DT73_9FLAO Cytochrome oxidase maturation protein cbb3-type OS=Seonamhaeicola sp. S2-3 OX=1936081 GN=BWZ22_10905 PE=4 SV=1
MM1 pKa = 7.8KK2 pKa = 10.03IFFIGTIIMFFMFSCSDD19 pKa = 4.05DD20 pKa = 3.28IKK22 pKa = 10.77SYY24 pKa = 10.77PVGSDD29 pKa = 4.55FIDD32 pKa = 3.44NDD34 pKa = 3.62VNLKK38 pKa = 10.47VLDD41 pKa = 3.99TFTINAGTFKK51 pKa = 10.63LDD53 pKa = 3.43SLITSSTSRR62 pKa = 11.84ILLGSVKK69 pKa = 10.5DD70 pKa = 4.27DD71 pKa = 3.42YY72 pKa = 11.46FGNLTAQSYY81 pKa = 7.68FQVVNSDD88 pKa = 3.61FSISSDD94 pKa = 3.11AVYY97 pKa = 10.93DD98 pKa = 4.31SIGLVLNYY106 pKa = 10.68DD107 pKa = 3.24NYY109 pKa = 11.31YY110 pKa = 10.7YY111 pKa = 11.4GDD113 pKa = 3.51TTRR116 pKa = 11.84VQTYY120 pKa = 9.11KK121 pKa = 9.88VHH123 pKa = 7.08RR124 pKa = 11.84LLEE127 pKa = 4.28YY128 pKa = 10.64FEE130 pKa = 5.13PPEE133 pKa = 6.07DD134 pKa = 4.95DD135 pKa = 3.67DD136 pKa = 5.43AFYY139 pKa = 11.25NVSKK143 pKa = 11.04LEE145 pKa = 3.9YY146 pKa = 10.24DD147 pKa = 3.79EE148 pKa = 5.69EE149 pKa = 4.48PLGEE153 pKa = 4.36FTFSPRR159 pKa = 11.84PTSTSDD165 pKa = 3.32SIYY168 pKa = 10.69IPIDD172 pKa = 3.36KK173 pKa = 10.74DD174 pKa = 3.27LGEE177 pKa = 4.64EE178 pKa = 3.94IFNKK182 pKa = 9.75IRR184 pKa = 11.84DD185 pKa = 3.64NDD187 pKa = 3.69INSTDD192 pKa = 4.42DD193 pKa = 4.25FIQYY197 pKa = 10.12FYY199 pKa = 10.93GLTVIPDD206 pKa = 3.73TLVDD210 pKa = 4.09SNVLGFTYY218 pKa = 10.21TSSSDD223 pKa = 3.19IEE225 pKa = 4.58NNSGMRR231 pKa = 11.84IFYY234 pKa = 10.18TEE236 pKa = 5.25DD237 pKa = 3.35NDD239 pKa = 5.29DD240 pKa = 3.81TNEE243 pKa = 4.55DD244 pKa = 3.56NDD246 pKa = 4.07HH247 pKa = 6.67VINFYY252 pKa = 10.62IPSSDD257 pKa = 3.35KK258 pKa = 10.89QFNTIKK264 pKa = 10.62NNLSGTVIEE273 pKa = 4.91NLDD276 pKa = 3.82DD277 pKa = 3.81QEE279 pKa = 4.47TTIDD283 pKa = 5.17SYY285 pKa = 11.68DD286 pKa = 3.43TDD288 pKa = 3.42QLIFAQGGIGVSARR302 pKa = 11.84IEE304 pKa = 4.23MPTLKK309 pKa = 10.39YY310 pKa = 10.77LKK312 pKa = 9.04TLSDD316 pKa = 3.61EE317 pKa = 4.4STSLSAEE324 pKa = 4.02LTFAPLLNSYY334 pKa = 11.16DD335 pKa = 3.68EE336 pKa = 4.3TRR338 pKa = 11.84PLQDD342 pKa = 2.89SLAVYY347 pKa = 10.14IVDD350 pKa = 3.34NKK352 pKa = 10.5NRR354 pKa = 11.84IVSQLTDD361 pKa = 3.19ADD363 pKa = 4.4ANTSYY368 pKa = 11.39AILNQDD374 pKa = 2.44SDD376 pKa = 4.18EE377 pKa = 4.67FNEE380 pKa = 4.14STYY383 pKa = 11.37YY384 pKa = 10.64SIDD387 pKa = 2.97MSGFVEE393 pKa = 4.82TIFNSEE399 pKa = 3.48TDD401 pKa = 3.5LNYY404 pKa = 10.89AIMIQFIDD412 pKa = 3.59YY413 pKa = 10.15NKK415 pKa = 9.72TVDD418 pKa = 4.17SVIIDD423 pKa = 4.58DD424 pKa = 5.8LNEE427 pKa = 4.58DD428 pKa = 4.13DD429 pKa = 5.72NNIKK433 pKa = 10.79LSVTYY438 pKa = 10.53LEE440 pKa = 4.62YY441 pKa = 11.1

Molecular weight: 50.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1U7DTE0|A0A1U7DTE0_9FLAO Uncharacterized protein OS=Seonamhaeicola sp. S2-3 OX=1936081 GN=BWZ22_10815 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.09GRR40 pKa = 11.84KK41 pKa = 7.97KK42 pKa = 10.72LSVSSEE48 pKa = 3.76ARR50 pKa = 11.84HH51 pKa = 5.78KK52 pKa = 10.72KK53 pKa = 9.83

Molecular weight: 6.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3101

0

3101

1092078

26

2404

352.2

39.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.155 ± 0.039

0.762 ± 0.015

5.453 ± 0.035

6.464 ± 0.038

5.222 ± 0.035

6.14 ± 0.039

1.796 ± 0.02

8.078 ± 0.042

8.345 ± 0.055

9.251 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.009 ± 0.022

6.858 ± 0.05

3.337 ± 0.026

3.216 ± 0.023

3.186 ± 0.03

6.402 ± 0.037

5.88 ± 0.049

6.188 ± 0.033

1.046 ± 0.015

4.212 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski