Pantoea wallisii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3765 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X1DC84|A0A1X1DC84_9GAMM AAA_13 domain-containing protein OS=Pantoea wallisii OX=1076551 GN=HA48_04385 PE=4 SV=1
MM1 pKa = 7.52QYY3 pKa = 10.37EE4 pKa = 4.04DD5 pKa = 3.93LYY7 pKa = 11.42RR8 pKa = 11.84RR9 pKa = 11.84IAQIIFSCGPDD20 pKa = 3.64GARR23 pKa = 11.84MLIVQAEE30 pKa = 4.38LFADD34 pKa = 3.82EE35 pKa = 6.41DD36 pKa = 3.81GGQYY40 pKa = 10.05QFDD43 pKa = 4.44YY44 pKa = 10.43IDD46 pKa = 3.95EE47 pKa = 4.56KK48 pKa = 11.67GEE50 pKa = 4.2PDD52 pKa = 3.51WFEE55 pKa = 4.04PDD57 pKa = 2.79ARR59 pKa = 11.84AIGDD63 pKa = 3.58LTVALKK69 pKa = 10.74AFQQYY74 pKa = 8.96FVDD77 pKa = 4.18NDD79 pKa = 3.54MTQGQPVWTHH89 pKa = 4.77CTITVDD95 pKa = 3.72VEE97 pKa = 4.1QEE99 pKa = 4.09AISIDD104 pKa = 3.77VQQ106 pKa = 3.42

Molecular weight: 12.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X1D4B3|A0A1X1D4B3_9GAMM Site-specific DNA-methyltransferase (adenine-specific) OS=Pantoea wallisii OX=1076551 GN=HA48_15585 PE=3 SV=1
MM1 pKa = 7.16VARR4 pKa = 11.84AGQPSGWPVSFVAGFSPPSGLPPKK28 pKa = 10.34RR29 pKa = 11.84EE30 pKa = 4.03NFCGSSFQLTKK41 pKa = 10.58EE42 pKa = 4.08LFIMAVIFCTSRR54 pKa = 11.84SEE56 pKa = 4.0FTFIFAAIRR65 pKa = 11.84RR66 pKa = 11.84TDD68 pKa = 3.24AAARR72 pKa = 11.84PCMLRR77 pKa = 11.84TVAGDD82 pKa = 3.47EE83 pKa = 4.03RR84 pKa = 11.84SARR87 pKa = 11.84ASLARR92 pKa = 11.84DD93 pKa = 3.49YY94 pKa = 11.33VLSFAGRR101 pKa = 11.84LPVKK105 pKa = 10.43AVAAA109 pKa = 4.31

Molecular weight: 11.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3765

0

3765

1157890

29

2019

307.5

33.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.592 ± 0.05

0.981 ± 0.015

5.158 ± 0.033

5.347 ± 0.04

3.779 ± 0.028

7.452 ± 0.044

2.376 ± 0.02

5.497 ± 0.032

3.73 ± 0.036

11.212 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.696 ± 0.019

3.485 ± 0.031

4.498 ± 0.029

4.985 ± 0.037

5.958 ± 0.034

5.896 ± 0.033

5.191 ± 0.024

6.998 ± 0.03

1.541 ± 0.019

2.63 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski