Neisseria bacilliformis ATCC BAA-1200

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria bacilliformis

Average proteome isoelectric point is 7.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2966 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F2BDH6|F2BDH6_9NEIS Uncharacterized protein OS=Neisseria bacilliformis ATCC BAA-1200 OX=888742 GN=HMPREF9123_1782 PE=4 SV=1
MM1 pKa = 6.99NTLPYY6 pKa = 10.02QPEE9 pKa = 3.54IAARR13 pKa = 11.84MLAGGEE19 pKa = 4.09ANDD22 pKa = 4.76TIRR25 pKa = 11.84PDD27 pKa = 3.03ARR29 pKa = 11.84FIQTANGHH37 pKa = 6.1WIAWHH42 pKa = 7.33DD43 pKa = 4.16PDD45 pKa = 4.54TPAAVLPPDD54 pKa = 3.94TPAGEE59 pKa = 3.9PCFWVEE65 pKa = 3.93GAEE68 pKa = 4.14DD69 pKa = 3.7LAEE72 pKa = 4.08LVHH75 pKa = 5.91MAEE78 pKa = 4.94NGDD81 pKa = 3.93FDD83 pKa = 5.36HH84 pKa = 7.55LDD86 pKa = 3.87DD87 pKa = 6.04ADD89 pKa = 5.55DD90 pKa = 4.09GTEE93 pKa = 4.37PPPHH97 pKa = 6.68TCTCGCAHH105 pKa = 7.53DD106 pKa = 4.02

Molecular weight: 11.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F2BGB8|F2BGB8_9NEIS Uncharacterized protein OS=Neisseria bacilliformis ATCC BAA-1200 OX=888742 GN=HMPREF9123_2775 PE=4 SV=1
MM1 pKa = 7.19FPAARR6 pKa = 11.84QIRR9 pKa = 11.84AFSQNPNRR17 pKa = 11.84VRR19 pKa = 11.84GRR21 pKa = 11.84ATHH24 pKa = 6.2SAQTTRR30 pKa = 11.84GRR32 pKa = 11.84LKK34 pKa = 9.43TRR36 pKa = 11.84KK37 pKa = 7.94TGFQTASS44 pKa = 3.01

Molecular weight: 4.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2966

0

2966

711328

39

2626

239.8

26.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.226 ± 0.083

1.204 ± 0.02

5.046 ± 0.037

5.61 ± 0.054

4.066 ± 0.035

7.713 ± 0.055

2.211 ± 0.026

4.865 ± 0.039

4.764 ± 0.042

10.034 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.354 ± 0.026

3.61 ± 0.038

4.905 ± 0.051

4.182 ± 0.037

6.525 ± 0.059

5.146 ± 0.044

5.168 ± 0.039

6.273 ± 0.048

1.282 ± 0.022

2.818 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski