Caloramator quimbayensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Caloramator

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2996 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4XLY1|A0A1T4XLY1_9CLOT 3'-5' exoribonuclease OS=Caloramator quimbayensis OX=1147123 GN=SAMN05443428_11090 PE=4 SV=1
MM1 pKa = 7.62IKK3 pKa = 10.2HH4 pKa = 6.09KK5 pKa = 10.55EE6 pKa = 3.69ILNFLEE12 pKa = 4.42NEE14 pKa = 4.04GLEE17 pKa = 4.39EE18 pKa = 4.32IDD20 pKa = 3.68EE21 pKa = 4.21IEE23 pKa = 4.14YY24 pKa = 11.19NKK26 pKa = 10.88DD27 pKa = 2.5IFVYY31 pKa = 10.61NFFYY35 pKa = 10.62TFDD38 pKa = 3.59EE39 pKa = 4.71AEE41 pKa = 3.8IEE43 pKa = 4.17AAKK46 pKa = 10.39EE47 pKa = 3.8YY48 pKa = 11.33ANEE51 pKa = 4.06NCDD54 pKa = 3.69AEE56 pKa = 4.48STEE59 pKa = 4.86DD60 pKa = 3.06EE61 pKa = 4.46WNEE64 pKa = 3.94EE65 pKa = 4.01FYY67 pKa = 11.2LPYY70 pKa = 9.91LTDD73 pKa = 3.27IAADD77 pKa = 3.63NVRR80 pKa = 11.84DD81 pKa = 3.88IVDD84 pKa = 4.97DD85 pKa = 3.43ICEE88 pKa = 4.01EE89 pKa = 3.99FGLFGEE95 pKa = 5.08FVAYY99 pKa = 9.79EE100 pKa = 4.0MDD102 pKa = 3.28MGSSEE107 pKa = 4.13RR108 pKa = 11.84CEE110 pKa = 3.97FTVVFAKK117 pKa = 10.56EE118 pKa = 4.26GIEE121 pKa = 3.92FDD123 pKa = 3.34IDD125 pKa = 3.82EE126 pKa = 4.43IMEE129 pKa = 4.27KK130 pKa = 11.03LEE132 pKa = 3.99LL133 pKa = 4.55

Molecular weight: 15.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4Y8E7|A0A1T4Y8E7_9CLOT LysR substrate binding domain-containing protein OS=Caloramator quimbayensis OX=1147123 GN=SAMN05443428_1274 PE=4 SV=1
MM1 pKa = 7.45LRR3 pKa = 11.84TYY5 pKa = 9.8QPKK8 pKa = 9.46KK9 pKa = 8.28RR10 pKa = 11.84QRR12 pKa = 11.84KK13 pKa = 8.39KK14 pKa = 8.49EE15 pKa = 3.5HH16 pKa = 6.11GFRR19 pKa = 11.84KK20 pKa = 9.7RR21 pKa = 11.84MKK23 pKa = 8.35TRR25 pKa = 11.84SGRR28 pKa = 11.84LVLQRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.44GRR39 pKa = 11.84KK40 pKa = 9.05KK41 pKa = 9.62LTAA44 pKa = 4.2

Molecular weight: 5.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2996

0

2996

921638

25

2731

307.6

34.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.854 ± 0.056

1.268 ± 0.021

5.669 ± 0.034

7.181 ± 0.051

4.497 ± 0.032

6.369 ± 0.049

1.281 ± 0.016

10.42 ± 0.048

9.202 ± 0.05

8.835 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.581 ± 0.021

5.956 ± 0.045

2.986 ± 0.024

2.272 ± 0.024

3.576 ± 0.035

6.204 ± 0.045

4.539 ± 0.034

6.295 ± 0.04

0.655 ± 0.014

4.359 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski