Georgenia soli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Bogoriellaceae; Georgenia

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3768 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A9ELZ2|A0A2A9ELZ2_9MICO Uracil-xanthine permease OS=Georgenia soli OX=638953 GN=ATJ97_1783 PE=3 SV=1
MM1 pKa = 7.33HH2 pKa = 7.82RR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84LLASTAAAAAAVLALSACAPSDD27 pKa = 3.82DD28 pKa = 4.96APDD31 pKa = 4.47PGADD35 pKa = 3.48GGATSAAGSDD45 pKa = 3.51EE46 pKa = 4.11CAEE49 pKa = 4.08PVALDD54 pKa = 3.21VWSWRR59 pKa = 11.84TEE61 pKa = 4.01DD62 pKa = 3.37KK63 pKa = 10.33DD64 pKa = 3.65TYY66 pKa = 9.8EE67 pKa = 4.17TIFDD71 pKa = 3.89VFEE74 pKa = 4.18EE75 pKa = 4.55ANPCITVNFQAYY87 pKa = 9.78KK88 pKa = 8.16NTEE91 pKa = 3.98YY92 pKa = 11.18NQILQTGLTGSDD104 pKa = 3.85GPDD107 pKa = 3.0VAQVRR112 pKa = 11.84SYY114 pKa = 11.78GLLQPLVEE122 pKa = 4.97GGNLAPLDD130 pKa = 4.07DD131 pKa = 4.61VVPALADD138 pKa = 3.64FDD140 pKa = 4.41EE141 pKa = 4.86AALDD145 pKa = 3.82GARR148 pKa = 11.84GKK150 pKa = 10.59EE151 pKa = 3.73DD152 pKa = 2.93GGIYY156 pKa = 10.09GVPFAAQTIQVFYY169 pKa = 9.23NTAIFEE175 pKa = 4.29EE176 pKa = 4.92HH177 pKa = 6.45GLEE180 pKa = 4.96EE181 pKa = 4.69PEE183 pKa = 3.92TWEE186 pKa = 5.36DD187 pKa = 4.81FIAANDD193 pKa = 3.92TLKK196 pKa = 10.87EE197 pKa = 4.09AGVTPLAVGAKK208 pKa = 9.59DD209 pKa = 2.93AWFVPTVHH217 pKa = 7.4DD218 pKa = 4.61ALTAAQYY225 pKa = 11.1GGAEE229 pKa = 4.22FQQKK233 pKa = 10.02LRR235 pKa = 11.84DD236 pKa = 3.71GEE238 pKa = 4.36TDD240 pKa = 3.81FNDD243 pKa = 3.47PAYY246 pKa = 10.55VKK248 pKa = 10.29SIQSFADD255 pKa = 3.65LEE257 pKa = 4.39QYY259 pKa = 10.07MPDD262 pKa = 3.58DD263 pKa = 4.14VVGVAYY269 pKa = 9.65TDD271 pKa = 3.51AQVLFTSGAAAMFAGGSYY289 pKa = 10.39EE290 pKa = 4.06LAFFQSTNPEE300 pKa = 3.94LEE302 pKa = 4.13LGVFQVPPPEE312 pKa = 5.08GSALDD317 pKa = 4.07HH318 pKa = 6.52PVSPGYY324 pKa = 11.09ADD326 pKa = 4.44GNWGLSAASDD336 pKa = 3.71NPEE339 pKa = 3.82EE340 pKa = 5.83AEE342 pKa = 4.48TLLNWLASEE351 pKa = 4.69EE352 pKa = 4.04FGQMVANDD360 pKa = 4.74LKK362 pKa = 10.97QFSPVPGVTFDD373 pKa = 3.65EE374 pKa = 4.79PLMQEE379 pKa = 3.64MWDD382 pKa = 4.21LYY384 pKa = 10.58QEE386 pKa = 4.29NPAPYY391 pKa = 10.13LLLVDD396 pKa = 3.99YY397 pKa = 10.64RR398 pKa = 11.84YY399 pKa = 10.78GDD401 pKa = 3.57PVGTDD406 pKa = 3.06LMGEE410 pKa = 4.77GGQQLFLGEE419 pKa = 4.14LDD421 pKa = 3.7AAGVASKK428 pKa = 10.53IQDD431 pKa = 3.74GLSAWWTPGQQ441 pKa = 3.68

Molecular weight: 47.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A9EQ30|A0A2A9EQ30_9MICO Uncharacterized protein (DUF1697 family) OS=Georgenia soli OX=638953 GN=ATJ97_3620 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.79HH17 pKa = 5.67RR18 pKa = 11.84KK19 pKa = 8.31LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3768

0

3768

1259096

29

2069

334.2

35.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.005 ± 0.058

0.541 ± 0.009

6.103 ± 0.037

5.941 ± 0.042

2.547 ± 0.023

9.516 ± 0.037

2.133 ± 0.02

3.079 ± 0.031

1.569 ± 0.026

10.265 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.789 ± 0.016

1.664 ± 0.02

5.934 ± 0.034

2.665 ± 0.021

7.918 ± 0.047

4.952 ± 0.028

6.22 ± 0.031

9.829 ± 0.04

1.457 ± 0.017

1.874 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski