Shewanella maritima

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3709 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A411PJ71|A0A411PJ71_9GAMM Response regulator OS=Shewanella maritima OX=2520507 GN=EXU30_13670 PE=4 SV=1
MM1 pKa = 7.34KK2 pKa = 10.17RR3 pKa = 11.84IYY5 pKa = 10.05PIALAASLIALAGCSDD21 pKa = 4.59DD22 pKa = 5.28DD23 pKa = 4.45NDD25 pKa = 5.07VITIEE30 pKa = 3.9QDD32 pKa = 3.14EE33 pKa = 4.91PQTMAYY39 pKa = 9.88VRR41 pKa = 11.84VIHH44 pKa = 6.72AGSDD48 pKa = 3.47APKK51 pKa = 10.91VNVNVNGSQLLADD64 pKa = 3.83VDD66 pKa = 4.27YY67 pKa = 11.58AMSSGLIQVDD77 pKa = 3.51TATYY81 pKa = 10.26DD82 pKa = 3.21IDD84 pKa = 3.7VDD86 pKa = 4.95AILADD91 pKa = 3.72GTTATVLEE99 pKa = 4.73TNLSTEE105 pKa = 3.75ADD107 pKa = 3.44MEE109 pKa = 4.39YY110 pKa = 9.68TAVAVGSVAEE120 pKa = 4.12EE121 pKa = 3.82TLALKK126 pKa = 10.75LIANPMAAIASGYY139 pKa = 10.88ARR141 pKa = 11.84VQVLHH146 pKa = 6.61AAADD150 pKa = 3.59VGLVDD155 pKa = 5.05IYY157 pKa = 10.39VTEE160 pKa = 4.54PGADD164 pKa = 3.35IDD166 pKa = 4.16MMSPTLSANYY176 pKa = 8.94MDD178 pKa = 5.07NSEE181 pKa = 4.15QLEE184 pKa = 4.59LATGDD189 pKa = 3.47YY190 pKa = 10.16QIRR193 pKa = 11.84ITASGMKK200 pKa = 10.11DD201 pKa = 3.27VVYY204 pKa = 10.79DD205 pKa = 3.65SGTITLGDD213 pKa = 3.46MTDD216 pKa = 3.8YY217 pKa = 10.89LVSAITNTWSGDD229 pKa = 3.45APVALHH235 pKa = 6.27IALVEE240 pKa = 4.17GQVIVNDD247 pKa = 4.13ANSGADD253 pKa = 3.33LRR255 pKa = 11.84VIHH258 pKa = 6.69AVADD262 pKa = 3.87APEE265 pKa = 4.19VDD267 pKa = 4.23VFLDD271 pKa = 3.99DD272 pKa = 3.7ATSPAVDD279 pKa = 3.31MLAFKK284 pKa = 11.04AFTPYY289 pKa = 10.96VNIPEE294 pKa = 4.38GMHH297 pKa = 5.52TVTVAADD304 pKa = 3.5ADD306 pKa = 3.88NSVVVIDD313 pKa = 4.44KK314 pKa = 11.23APIEE318 pKa = 4.03PMIGMSYY325 pKa = 10.56SAFAVGSLSDD335 pKa = 5.19DD336 pKa = 3.63MIEE339 pKa = 4.14PLVLMEE345 pKa = 4.04DD346 pKa = 3.56TRR348 pKa = 11.84RR349 pKa = 11.84VATEE353 pKa = 3.39AKK355 pKa = 10.59LNVLHH360 pKa = 6.54SAYY363 pKa = 10.32SAPEE367 pKa = 3.49VDD369 pKa = 5.26IYY371 pKa = 11.01LTDD374 pKa = 3.55SADD377 pKa = 3.26ISEE380 pKa = 4.73ATPALTSVPFKK391 pKa = 9.91MASGSLSIAPGNYY404 pKa = 8.03TISVAVAGTKK414 pKa = 8.88TVAIGPLDD422 pKa = 3.59VTLEE426 pKa = 3.94AGGIYY431 pKa = 10.22GVAAVDD437 pKa = 3.66NMGGGAPFGVILLDD451 pKa = 4.36DD452 pKa = 5.23FNAEE456 pKa = 3.99MM457 pKa = 5.18

Molecular weight: 47.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A411PI14|A0A411PI14_9GAMM Der GTPase-activating protein YihI OS=Shewanella maritima OX=2520507 GN=yihI PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLKK12 pKa = 10.14RR13 pKa = 11.84KK14 pKa = 9.13RR15 pKa = 11.84SHH17 pKa = 6.17GFRR20 pKa = 11.84ARR22 pKa = 11.84MATVGGRR29 pKa = 11.84KK30 pKa = 9.01VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.39GRR40 pKa = 11.84ARR42 pKa = 11.84LSAA45 pKa = 3.91

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3709

0

3709

1257756

27

8132

339.1

37.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.186 ± 0.042

1.009 ± 0.016

5.797 ± 0.05

5.957 ± 0.043

3.994 ± 0.029

6.73 ± 0.038

2.228 ± 0.024

6.084 ± 0.031

5.256 ± 0.047

10.136 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.583 ± 0.025

4.453 ± 0.048

3.784 ± 0.024

5.173 ± 0.044

4.124 ± 0.047

6.75 ± 0.04

5.47 ± 0.091

7.037 ± 0.037

1.171 ± 0.014

3.078 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski