Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_166

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.075AlaAla: 8.075 ± 6.476
0.673AlaCys: 0.673 ± 0.585
5.384AlaAsp: 5.384 ± 1.171
4.711AlaGlu: 4.711 ± 1.698
5.384AlaPhe: 5.384 ± 1.205
6.057AlaGly: 6.057 ± 0.974
0.0AlaHis: 0.0 ± 0.0
2.692AlaIle: 2.692 ± 1.389
3.365AlaLys: 3.365 ± 1.456
2.692AlaLeu: 2.692 ± 1.261
0.673AlaMet: 0.673 ± 0.44
5.384AlaAsn: 5.384 ± 2.513
2.019AlaPro: 2.019 ± 0.836
0.673AlaGln: 0.673 ± 0.623
3.365AlaArg: 3.365 ± 1.108
6.057AlaSer: 6.057 ± 2.369
2.692AlaThr: 2.692 ± 1.282
4.038AlaVal: 4.038 ± 1.388
2.692AlaTrp: 2.692 ± 1.261
3.365AlaTyr: 3.365 ± 0.906
0.0AlaXaa: 0.0 ± 0.0
Cys
1.346CysAla: 1.346 ± 1.103
1.346CysCys: 1.346 ± 0.508
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.673CysPhe: 0.673 ± 0.994
2.019CysGly: 2.019 ± 0.922
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
2.019CysLeu: 2.019 ± 0.922
0.673CysMet: 0.673 ± 0.585
0.673CysAsn: 0.673 ± 0.44
0.673CysPro: 0.673 ± 0.44
1.346CysGln: 1.346 ± 1.169
0.0CysArg: 0.0 ± 0.0
2.019CysSer: 2.019 ± 2.017
0.0CysThr: 0.0 ± 0.0
2.019CysVal: 2.019 ± 0.82
0.0CysTrp: 0.0 ± 0.0
1.346CysTyr: 1.346 ± 1.169
0.0CysXaa: 0.0 ± 0.0
Asp
4.711AspAla: 4.711 ± 1.874
0.0AspCys: 0.0 ± 0.0
1.346AspAsp: 1.346 ± 1.169
2.692AspGlu: 2.692 ± 1.274
8.748AspPhe: 8.748 ± 1.063
4.038AspGly: 4.038 ± 0.973
2.692AspHis: 2.692 ± 1.016
3.365AspIle: 3.365 ± 2.402
4.038AspLys: 4.038 ± 0.73
5.384AspLeu: 5.384 ± 0.955
0.673AspMet: 0.673 ± 0.781
3.365AspAsn: 3.365 ± 2.439
4.711AspPro: 4.711 ± 1.094
1.346AspGln: 1.346 ± 0.965
3.365AspArg: 3.365 ± 1.396
4.711AspSer: 4.711 ± 1.322
6.057AspThr: 6.057 ± 1.677
4.038AspVal: 4.038 ± 0.73
0.0AspTrp: 0.0 ± 0.0
6.057AspTyr: 6.057 ± 1.061
0.0AspXaa: 0.0 ± 0.0
Glu
2.692GluAla: 2.692 ± 0.916
0.0GluCys: 0.0 ± 0.0
2.692GluAsp: 2.692 ± 1.274
0.673GluGlu: 0.673 ± 0.44
4.038GluPhe: 4.038 ± 1.532
0.0GluGly: 0.0 ± 0.0
2.019GluHis: 2.019 ± 0.891
2.692GluIle: 2.692 ± 0.699
1.346GluLys: 1.346 ± 0.884
2.019GluLeu: 2.019 ± 1.003
2.019GluMet: 2.019 ± 0.934
1.346GluAsn: 1.346 ± 0.88
1.346GluPro: 1.346 ± 0.88
0.673GluGln: 0.673 ± 0.44
2.692GluArg: 2.692 ± 1.323
5.384GluSer: 5.384 ± 2.43
2.019GluThr: 2.019 ± 1.186
5.384GluVal: 5.384 ± 2.519
0.673GluTrp: 0.673 ± 0.623
2.692GluTyr: 2.692 ± 1.016
0.0GluXaa: 0.0 ± 0.0
Phe
3.365PheAla: 3.365 ± 1.639
0.673PheCys: 0.673 ± 0.44
6.057PheAsp: 6.057 ± 1.132
2.019PheGlu: 2.019 ± 1.754
4.711PhePhe: 4.711 ± 0.958
2.019PheGly: 2.019 ± 0.664
1.346PheHis: 1.346 ± 0.88
1.346PheIle: 1.346 ± 1.989
3.365PheLys: 3.365 ± 0.906
6.729PheLeu: 6.729 ± 1.577
3.365PheMet: 3.365 ± 2.123
2.019PheAsn: 2.019 ± 0.82
2.692PhePro: 2.692 ± 1.274
0.673PheGln: 0.673 ± 0.585
2.692PheArg: 2.692 ± 1.686
3.365PheSer: 3.365 ± 0.906
4.038PheThr: 4.038 ± 1.162
2.019PheVal: 2.019 ± 1.095
0.0PheTrp: 0.0 ± 0.0
2.692PheTyr: 2.692 ± 0.638
0.0PheXaa: 0.0 ± 0.0
Gly
3.365GlyAla: 3.365 ± 2.381
1.346GlyCys: 1.346 ± 0.508
5.384GlyAsp: 5.384 ± 1.898
4.711GlyGlu: 4.711 ± 1.477
3.365GlyPhe: 3.365 ± 1.402
3.365GlyGly: 3.365 ± 1.527
2.692GlyHis: 2.692 ± 1.218
2.692GlyIle: 2.692 ± 0.638
2.019GlyLys: 2.019 ± 1.754
5.384GlyLeu: 5.384 ± 1.199
1.346GlyMet: 1.346 ± 0.943
2.692GlyAsn: 2.692 ± 1.074
0.673GlyPro: 0.673 ± 0.585
0.0GlyGln: 0.0 ± 0.0
2.692GlyArg: 2.692 ± 0.638
7.402GlySer: 7.402 ± 2.212
2.019GlyThr: 2.019 ± 0.934
4.038GlyVal: 4.038 ± 0.966
0.673GlyTrp: 0.673 ± 0.44
3.365GlyTyr: 3.365 ± 1.014
0.0GlyXaa: 0.0 ± 0.0
His
1.346HisAla: 1.346 ± 0.508
0.673HisCys: 0.673 ± 0.585
2.019HisAsp: 2.019 ± 1.095
0.673HisGlu: 0.673 ± 0.44
2.019HisPhe: 2.019 ± 0.836
3.365HisGly: 3.365 ± 1.203
1.346HisHis: 1.346 ± 0.88
0.673HisIle: 0.673 ± 0.832
0.0HisLys: 0.0 ± 0.0
4.038HisLeu: 4.038 ± 1.499
0.673HisMet: 0.673 ± 0.546
0.0HisAsn: 0.0 ± 0.0
2.019HisPro: 2.019 ± 1.361
0.673HisGln: 0.673 ± 0.585
2.692HisArg: 2.692 ± 0.934
1.346HisSer: 1.346 ± 0.88
2.019HisThr: 2.019 ± 1.32
3.365HisVal: 3.365 ± 1.51
0.673HisTrp: 0.673 ± 0.44
2.692HisTyr: 2.692 ± 0.647
0.0HisXaa: 0.0 ± 0.0
Ile
4.038IleAla: 4.038 ± 0.966
1.346IleCys: 1.346 ± 0.949
6.057IleAsp: 6.057 ± 1.849
1.346IleGlu: 1.346 ± 1.989
3.365IlePhe: 3.365 ± 1.985
2.019IleGly: 2.019 ± 1.032
2.019IleHis: 2.019 ± 0.75
2.692IleIle: 2.692 ± 1.679
2.692IleLys: 2.692 ± 1.853
5.384IleLeu: 5.384 ± 0.912
0.673IleMet: 0.673 ± 0.623
1.346IleAsn: 1.346 ± 0.74
4.711IlePro: 4.711 ± 1.874
2.692IleGln: 2.692 ± 1.074
2.692IleArg: 2.692 ± 0.934
2.692IleSer: 2.692 ± 1.016
2.692IleThr: 2.692 ± 1.219
1.346IleVal: 1.346 ± 0.965
0.673IleTrp: 0.673 ± 0.585
1.346IleTyr: 1.346 ± 0.88
0.0IleXaa: 0.0 ± 0.0
Lys
0.673LysAla: 0.673 ± 0.623
1.346LysCys: 1.346 ± 1.103
0.673LysAsp: 0.673 ± 0.585
2.692LysGlu: 2.692 ± 0.647
2.692LysPhe: 2.692 ± 1.016
2.692LysGly: 2.692 ± 1.046
1.346LysHis: 1.346 ± 0.746
4.038LysIle: 4.038 ± 1.906
3.365LysLys: 3.365 ± 2.923
3.365LysLeu: 3.365 ± 2.923
2.019LysMet: 2.019 ± 0.971
2.692LysAsn: 2.692 ± 1.439
1.346LysPro: 1.346 ± 0.508
1.346LysGln: 1.346 ± 0.508
2.019LysArg: 2.019 ± 1.186
4.711LysSer: 4.711 ± 1.245
1.346LysThr: 1.346 ± 1.141
3.365LysVal: 3.365 ± 2.001
0.0LysTrp: 0.0 ± 0.0
3.365LysTyr: 3.365 ± 0.922
0.0LysXaa: 0.0 ± 0.0
Leu
4.711LeuAla: 4.711 ± 1.436
0.0LeuCys: 0.0 ± 0.0
5.384LeuAsp: 5.384 ± 2.53
3.365LeuGlu: 3.365 ± 1.479
2.019LeuPhe: 2.019 ± 0.82
7.402LeuGly: 7.402 ± 0.963
2.692LeuHis: 2.692 ± 1.148
2.692LeuIle: 2.692 ± 1.119
4.038LeuLys: 4.038 ± 2.015
2.692LeuLeu: 2.692 ± 0.934
2.692LeuMet: 2.692 ± 1.226
3.365LeuAsn: 3.365 ± 0.839
6.729LeuPro: 6.729 ± 3.133
4.711LeuGln: 4.711 ± 1.921
6.057LeuArg: 6.057 ± 1.808
6.729LeuSer: 6.729 ± 1.668
4.038LeuThr: 4.038 ± 1.499
1.346LeuVal: 1.346 ± 1.432
1.346LeuTrp: 1.346 ± 0.508
5.384LeuTyr: 5.384 ± 0.6
0.0LeuXaa: 0.0 ± 0.0
Met
2.019MetAla: 2.019 ± 0.891
0.673MetCys: 0.673 ± 0.585
0.673MetAsp: 0.673 ± 0.781
2.019MetGlu: 2.019 ± 1.464
0.0MetPhe: 0.0 ± 0.0
1.346MetGly: 1.346 ± 0.631
1.346MetHis: 1.346 ± 0.88
2.019MetIle: 2.019 ± 1.459
0.673MetLys: 0.673 ± 0.585
3.365MetLeu: 3.365 ± 1.881
0.673MetMet: 0.673 ± 0.832
2.692MetAsn: 2.692 ± 1.624
1.346MetPro: 1.346 ± 0.88
1.346MetGln: 1.346 ± 1.562
1.346MetArg: 1.346 ± 0.74
3.365MetSer: 3.365 ± 1.242
0.0MetThr: 0.0 ± 0.0
1.346MetVal: 1.346 ± 1.432
0.0MetTrp: 0.0 ± 0.0
1.346MetTyr: 1.346 ± 0.508
0.0MetXaa: 0.0 ± 0.0
Asn
5.384AsnAla: 5.384 ± 1.008
0.0AsnCys: 0.0 ± 0.0
4.711AsnAsp: 4.711 ± 2.366
3.365AsnGlu: 3.365 ± 1.828
0.0AsnPhe: 0.0 ± 0.0
2.692AsnGly: 2.692 ± 0.848
0.673AsnHis: 0.673 ± 0.585
2.692AsnIle: 2.692 ± 1.256
0.0AsnLys: 0.0 ± 0.0
4.038AsnLeu: 4.038 ± 1.677
0.673AsnMet: 0.673 ± 0.585
2.019AsnAsn: 2.019 ± 0.934
2.692AsnPro: 2.692 ± 1.853
3.365AsnGln: 3.365 ± 1.639
4.038AsnArg: 4.038 ± 1.441
2.019AsnSer: 2.019 ± 1.17
1.346AsnThr: 1.346 ± 1.246
4.711AsnVal: 4.711 ± 2.501
0.0AsnTrp: 0.0 ± 0.0
2.692AsnTyr: 2.692 ± 0.638
0.0AsnXaa: 0.0 ± 0.0
Pro
2.019ProAla: 2.019 ± 1.65
1.346ProCys: 1.346 ± 0.965
4.038ProAsp: 4.038 ± 1.298
4.038ProGlu: 4.038 ± 1.173
3.365ProPhe: 3.365 ± 1.203
4.038ProGly: 4.038 ± 1.345
2.019ProHis: 2.019 ± 0.664
4.711ProIle: 4.711 ± 1.854
2.692ProLys: 2.692 ± 0.699
3.365ProLeu: 3.365 ± 0.961
1.346ProMet: 1.346 ± 0.88
2.692ProAsn: 2.692 ± 1.382
3.365ProPro: 3.365 ± 1.51
2.692ProGln: 2.692 ± 1.119
0.0ProArg: 0.0 ± 0.0
2.692ProSer: 2.692 ± 1.046
2.692ProThr: 2.692 ± 1.624
4.038ProVal: 4.038 ± 1.547
1.346ProTrp: 1.346 ± 1.047
1.346ProTyr: 1.346 ± 0.631
0.0ProXaa: 0.0 ± 0.0
Gln
1.346GlnAla: 1.346 ± 0.74
1.346GlnCys: 1.346 ± 1.103
2.692GlnAsp: 2.692 ± 1.074
1.346GlnGlu: 1.346 ± 0.631
1.346GlnPhe: 1.346 ± 0.973
0.673GlnGly: 0.673 ± 0.44
0.0GlnHis: 0.0 ± 0.0
3.365GlnIle: 3.365 ± 1.527
0.673GlnLys: 0.673 ± 0.44
2.692GlnLeu: 2.692 ± 1.767
2.019GlnMet: 2.019 ± 1.286
2.692GlnAsn: 2.692 ± 1.261
1.346GlnPro: 1.346 ± 0.508
0.0GlnGln: 0.0 ± 0.0
5.384GlnArg: 5.384 ± 0.769
2.692GlnSer: 2.692 ± 1.261
3.365GlnThr: 3.365 ± 1.479
3.365GlnVal: 3.365 ± 1.479
0.0GlnTrp: 0.0 ± 0.0
1.346GlnTyr: 1.346 ± 0.88
0.0GlnXaa: 0.0 ± 0.0
Arg
2.692ArgAla: 2.692 ± 1.074
2.019ArgCys: 2.019 ± 2.017
3.365ArgAsp: 3.365 ± 1.48
0.673ArgGlu: 0.673 ± 0.44
2.019ArgPhe: 2.019 ± 1.279
2.692ArgGly: 2.692 ± 0.895
2.019ArgHis: 2.019 ± 0.922
1.346ArgIle: 1.346 ± 0.843
2.692ArgLys: 2.692 ± 2.206
4.711ArgLeu: 4.711 ± 1.236
2.019ArgMet: 2.019 ± 0.899
3.365ArgAsn: 3.365 ± 1.479
2.692ArgPro: 2.692 ± 1.016
4.038ArgGln: 4.038 ± 1.634
0.0ArgArg: 0.0 ± 0.0
4.038ArgSer: 4.038 ± 1.199
2.019ArgThr: 2.019 ± 0.537
1.346ArgVal: 1.346 ± 0.88
0.673ArgTrp: 0.673 ± 0.781
5.384ArgTyr: 5.384 ± 1.557
0.0ArgXaa: 0.0 ± 0.0
Ser
8.075SerAla: 8.075 ± 3.367
0.673SerCys: 0.673 ± 0.44
8.075SerAsp: 8.075 ± 2.733
2.692SerGlu: 2.692 ± 1.358
2.692SerPhe: 2.692 ± 1.849
6.057SerGly: 6.057 ± 4.878
4.038SerHis: 4.038 ± 1.321
6.057SerIle: 6.057 ± 1.659
6.057SerLys: 6.057 ± 2.151
5.384SerLeu: 5.384 ± 1.598
2.692SerMet: 2.692 ± 1.46
2.692SerAsn: 2.692 ± 1.01
4.711SerPro: 4.711 ± 1.698
4.038SerGln: 4.038 ± 1.499
2.019SerArg: 2.019 ± 0.537
10.767SerSer: 10.767 ± 6.268
1.346SerThr: 1.346 ± 1.103
4.711SerVal: 4.711 ± 1.63
2.019SerTrp: 2.019 ± 1.003
2.019SerTyr: 2.019 ± 1.479
0.0SerXaa: 0.0 ± 0.0
Thr
3.365ThrAla: 3.365 ± 2.42
1.346ThrCys: 1.346 ± 1.103
4.038ThrAsp: 4.038 ± 1.166
2.019ThrGlu: 2.019 ± 1.32
2.692ThrPhe: 2.692 ± 0.638
2.692ThrGly: 2.692 ± 0.848
0.673ThrHis: 0.673 ± 0.44
2.019ThrIle: 2.019 ± 1.479
2.019ThrLys: 2.019 ± 0.75
5.384ThrLeu: 5.384 ± 1.405
0.673ThrMet: 0.673 ± 0.44
2.019ThrAsn: 2.019 ± 1.65
3.365ThrPro: 3.365 ± 1.258
1.346ThrGln: 1.346 ± 0.88
2.019ThrArg: 2.019 ± 0.965
4.711ThrSer: 4.711 ± 1.171
3.365ThrThr: 3.365 ± 1.083
2.019ThrVal: 2.019 ± 1.032
0.673ThrTrp: 0.673 ± 0.623
4.038ThrTyr: 4.038 ± 0.973
0.0ThrXaa: 0.0 ± 0.0
Val
4.711ValAla: 4.711 ± 0.804
0.673ValCys: 0.673 ± 0.44
4.711ValAsp: 4.711 ± 2.184
2.019ValGlu: 2.019 ± 0.934
2.019ValPhe: 2.019 ± 1.095
0.673ValGly: 0.673 ± 0.585
2.692ValHis: 2.692 ± 0.895
3.365ValIle: 3.365 ± 1.119
4.038ValLys: 4.038 ± 1.246
3.365ValLeu: 3.365 ± 1.014
2.019ValMet: 2.019 ± 1.411
3.365ValAsn: 3.365 ± 0.853
4.711ValPro: 4.711 ± 1.426
3.365ValGln: 3.365 ± 1.014
2.692ValArg: 2.692 ± 1.373
6.057ValSer: 6.057 ± 2.001
2.019ValThr: 2.019 ± 1.32
4.038ValVal: 4.038 ± 0.966
0.0ValTrp: 0.0 ± 0.0
2.019ValTyr: 2.019 ± 1.306
0.0ValXaa: 0.0 ± 0.0
Trp
1.346TrpAla: 1.346 ± 0.508
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.673TrpGlu: 0.673 ± 0.44
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.673TrpHis: 0.673 ± 0.44
1.346TrpIle: 1.346 ± 0.508
0.673TrpLys: 0.673 ± 0.44
1.346TrpLeu: 1.346 ± 0.843
0.0TrpMet: 0.0 ± 0.0
0.673TrpAsn: 0.673 ± 0.781
0.0TrpPro: 0.0 ± 0.0
1.346TrpGln: 1.346 ± 0.746
0.0TrpArg: 0.0 ± 0.0
0.673TrpSer: 0.673 ± 0.585
2.692TrpThr: 2.692 ± 1.771
0.673TrpVal: 0.673 ± 0.623
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.711TyrAla: 4.711 ± 0.896
0.673TyrCys: 0.673 ± 0.585
4.038TyrAsp: 4.038 ± 0.73
0.673TyrGlu: 0.673 ± 0.44
4.038TyrPhe: 4.038 ± 1.321
5.384TyrGly: 5.384 ± 1.405
2.692TyrHis: 2.692 ± 1.009
2.019TyrIle: 2.019 ± 1.754
1.346TyrLys: 1.346 ± 1.103
4.038TyrLeu: 4.038 ± 1.552
0.0TyrMet: 0.0 ± 0.0
2.019TyrAsn: 2.019 ± 0.664
2.692TyrPro: 2.692 ± 0.925
2.019TyrGln: 2.019 ± 0.891
4.038TyrArg: 4.038 ± 1.298
5.384TyrSer: 5.384 ± 1.134
4.711TyrThr: 4.711 ± 1.082
1.346TyrVal: 1.346 ± 0.508
0.673TyrTrp: 0.673 ± 0.44
2.692TyrTyr: 2.692 ± 0.825
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1487 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski