Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_383

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.3AlaAla: 4.3 ± 1.971
0.0AlaCys: 0.0 ± 0.0
3.071AlaAsp: 3.071 ± 2.145
1.843AlaGlu: 1.843 ± 0.891
3.071AlaPhe: 3.071 ± 2.024
4.914AlaGly: 4.914 ± 1.529
1.843AlaHis: 1.843 ± 0.809
1.843AlaIle: 1.843 ± 0.276
2.457AlaLys: 2.457 ± 1.211
6.143AlaLeu: 6.143 ± 1.272
2.457AlaMet: 2.457 ± 0.469
4.3AlaAsn: 4.3 ± 2.927
1.229AlaPro: 1.229 ± 0.597
3.686AlaGln: 3.686 ± 3.052
3.686AlaArg: 3.686 ± 1.705
4.3AlaSer: 4.3 ± 1.15
3.071AlaThr: 3.071 ± 2.118
4.3AlaVal: 4.3 ± 1.285
1.229AlaTrp: 1.229 ± 0.932
4.914AlaTyr: 4.914 ± 1.274
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.843CysAsp: 1.843 ± 1.471
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.614CysLys: 0.614 ± 0.648
0.614CysLeu: 0.614 ± 0.466
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.614CysGln: 0.614 ± 0.466
1.843CysArg: 1.843 ± 1.471
0.0CysSer: 0.0 ± 0.0
0.614CysThr: 0.614 ± 0.49
1.229CysVal: 1.229 ± 0.605
0.0CysTrp: 0.0 ± 0.0
0.614CysTyr: 0.614 ± 0.466
0.0CysXaa: 0.0 ± 0.0
Asp
5.528AspAla: 5.528 ± 1.1
0.0AspCys: 0.0 ± 0.0
6.143AspAsp: 6.143 ± 1.833
4.914AspGlu: 4.914 ± 1.217
6.757AspPhe: 6.757 ± 2.368
3.071AspGly: 3.071 ± 0.79
0.614AspHis: 0.614 ± 0.466
6.757AspIle: 6.757 ± 1.721
4.3AspLys: 4.3 ± 0.612
5.528AspLeu: 5.528 ± 0.887
3.071AspMet: 3.071 ± 0.893
4.3AspAsn: 4.3 ± 0.682
1.229AspPro: 1.229 ± 1.149
0.0AspGln: 0.0 ± 0.0
3.071AspArg: 3.071 ± 0.79
1.843AspSer: 1.843 ± 0.852
7.371AspThr: 7.371 ± 1.651
5.528AspVal: 5.528 ± 1.524
2.457AspTrp: 2.457 ± 1.237
3.686AspTyr: 3.686 ± 1.221
0.0AspXaa: 0.0 ± 0.0
Glu
2.457GluAla: 2.457 ± 0.986
1.229GluCys: 1.229 ± 0.981
2.457GluAsp: 2.457 ± 1.304
3.071GluGlu: 3.071 ± 1.442
3.686GluPhe: 3.686 ± 1.221
3.071GluGly: 3.071 ± 0.979
0.614GluHis: 0.614 ± 0.49
1.843GluIle: 1.843 ± 0.276
1.229GluLys: 1.229 ± 0.605
3.686GluLeu: 3.686 ± 1.854
3.686GluMet: 3.686 ± 1.819
2.457GluAsn: 2.457 ± 0.986
0.0GluPro: 0.0 ± 0.0
5.528GluGln: 5.528 ± 2.528
4.914GluArg: 4.914 ± 1.602
3.686GluSer: 3.686 ± 2.157
2.457GluThr: 2.457 ± 0.986
0.614GluVal: 0.614 ± 0.49
0.0GluTrp: 0.0 ± 0.0
1.843GluTyr: 1.843 ± 0.852
0.0GluXaa: 0.0 ± 0.0
Phe
4.3PheAla: 4.3 ± 2.073
0.614PheCys: 0.614 ± 0.49
3.071PheAsp: 3.071 ± 1.095
1.229PheGlu: 1.229 ± 0.981
1.229PhePhe: 1.229 ± 0.932
7.371PheGly: 7.371 ± 0.702
1.843PheHis: 1.843 ± 0.891
1.843PheIle: 1.843 ± 0.852
4.3PheLys: 4.3 ± 1.707
3.686PheLeu: 3.686 ± 0.552
1.843PheMet: 1.843 ± 0.809
3.686PheAsn: 3.686 ± 2.057
2.457PhePro: 2.457 ± 0.961
0.614PheGln: 0.614 ± 1.124
2.457PheArg: 2.457 ± 1.304
3.071PheSer: 3.071 ± 0.44
1.843PheThr: 1.843 ± 0.852
3.686PheVal: 3.686 ± 1.839
0.614PheTrp: 0.614 ± 0.49
3.071PheTyr: 3.071 ± 0.44
0.0PheXaa: 0.0 ± 0.0
Gly
3.071GlyAla: 3.071 ± 1.513
0.614GlyCys: 0.614 ± 0.648
3.686GlyAsp: 3.686 ± 2.107
6.757GlyGlu: 6.757 ± 1.759
3.071GlyPhe: 3.071 ± 0.897
2.457GlyGly: 2.457 ± 2.593
0.0GlyHis: 0.0 ± 0.0
4.3GlyIle: 4.3 ± 0.798
3.686GlyLys: 3.686 ± 0.805
3.686GlyLeu: 3.686 ± 1.854
0.0GlyMet: 0.0 ± 0.0
4.3GlyAsn: 4.3 ± 1.646
0.614GlyPro: 0.614 ± 0.648
2.457GlyGln: 2.457 ± 1.23
1.229GlyArg: 1.229 ± 0.48
6.757GlySer: 6.757 ± 2.985
4.3GlyThr: 4.3 ± 2.067
4.3GlyVal: 4.3 ± 1.258
0.614GlyTrp: 0.614 ± 0.648
3.071GlyTyr: 3.071 ± 1.452
0.0GlyXaa: 0.0 ± 0.0
His
3.686HisAla: 3.686 ± 2.257
0.0HisCys: 0.0 ± 0.0
0.614HisAsp: 0.614 ± 0.49
0.614HisGlu: 0.614 ± 0.648
0.614HisPhe: 0.614 ± 0.466
0.614HisGly: 0.614 ± 0.466
0.0HisHis: 0.0 ± 0.0
1.229HisIle: 1.229 ± 0.981
1.229HisLys: 1.229 ± 0.981
1.229HisLeu: 1.229 ± 0.48
0.0HisMet: 0.0 ± 0.0
0.614HisAsn: 0.614 ± 0.49
1.843HisPro: 1.843 ± 1.471
0.0HisGln: 0.0 ± 0.0
1.229HisArg: 1.229 ± 0.48
1.843HisSer: 1.843 ± 0.809
1.229HisThr: 1.229 ± 0.48
0.614HisVal: 0.614 ± 0.49
0.0HisTrp: 0.0 ± 0.0
4.914HisTyr: 4.914 ± 3.226
0.0HisXaa: 0.0 ± 0.0
Ile
3.071IleAla: 3.071 ± 1.396
0.614IleCys: 0.614 ± 0.49
2.457IleAsp: 2.457 ± 1.349
1.843IleGlu: 1.843 ± 0.852
3.686IlePhe: 3.686 ± 1.703
3.686IleGly: 3.686 ± 1.791
1.843IleHis: 1.843 ± 0.852
1.229IleIle: 1.229 ± 1.149
4.3IleLys: 4.3 ± 0.879
3.686IleLeu: 3.686 ± 2.107
2.457IleMet: 2.457 ± 0.469
4.3IleAsn: 4.3 ± 1.31
0.614IlePro: 0.614 ± 0.49
1.229IleGln: 1.229 ± 1.081
4.3IleArg: 4.3 ± 1.387
4.3IleSer: 4.3 ± 0.612
4.3IleThr: 4.3 ± 0.798
0.614IleVal: 0.614 ± 0.466
0.0IleTrp: 0.0 ± 0.0
5.528IleTyr: 5.528 ± 3.078
0.0IleXaa: 0.0 ± 0.0
Lys
3.686LysAla: 3.686 ± 1.705
0.0LysCys: 0.0 ± 0.0
4.3LysAsp: 4.3 ± 0.879
1.843LysGlu: 1.843 ± 1.944
3.686LysPhe: 3.686 ± 1.233
5.528LysGly: 5.528 ± 2.555
0.614LysHis: 0.614 ± 0.49
3.686LysIle: 3.686 ± 1.027
4.3LysLys: 4.3 ± 2.74
5.528LysLeu: 5.528 ± 1.965
1.229LysMet: 1.229 ± 0.597
3.686LysAsn: 3.686 ± 1.329
1.843LysPro: 1.843 ± 1.198
3.071LysGln: 3.071 ± 0.817
1.229LysArg: 1.229 ± 0.981
4.914LysSer: 4.914 ± 1.059
4.914LysThr: 4.914 ± 1.732
3.686LysVal: 3.686 ± 0.552
0.0LysTrp: 0.0 ± 0.0
2.457LysTyr: 2.457 ± 0.526
0.0LysXaa: 0.0 ± 0.0
Leu
3.686LeuAla: 3.686 ± 2.157
1.229LeuCys: 1.229 ± 0.48
11.057LeuAsp: 11.057 ± 3.357
4.3LeuGlu: 4.3 ± 2.559
6.143LeuPhe: 6.143 ± 1.516
4.914LeuGly: 4.914 ± 1.32
2.457LeuHis: 2.457 ± 1.304
3.071LeuIle: 3.071 ± 1.758
5.528LeuLys: 5.528 ± 3.468
6.757LeuLeu: 6.757 ± 1.881
0.614LeuMet: 0.614 ± 0.456
5.528LeuAsn: 5.528 ± 3.263
4.3LeuPro: 4.3 ± 1.755
2.457LeuGln: 2.457 ± 1.055
3.686LeuArg: 3.686 ± 0.805
4.914LeuSer: 4.914 ± 3.047
3.686LeuThr: 3.686 ± 0.805
2.457LeuVal: 2.457 ± 1.055
0.0LeuTrp: 0.0 ± 0.0
4.914LeuTyr: 4.914 ± 0.937
0.0LeuXaa: 0.0 ± 0.0
Met
0.614MetAla: 0.614 ± 0.648
0.614MetCys: 0.614 ± 0.49
1.229MetAsp: 1.229 ± 0.605
0.614MetGlu: 0.614 ± 1.124
3.071MetPhe: 3.071 ± 0.817
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
2.457MetLys: 2.457 ± 1.146
1.843MetLeu: 1.843 ± 2.392
0.614MetMet: 0.614 ± 1.124
3.071MetAsn: 3.071 ± 0.893
0.614MetPro: 0.614 ± 0.466
3.686MetGln: 3.686 ± 2.309
1.229MetArg: 1.229 ± 0.981
2.457MetSer: 2.457 ± 1.23
0.614MetThr: 0.614 ± 0.466
1.229MetVal: 1.229 ± 0.932
0.614MetTrp: 0.614 ± 0.648
3.071MetTyr: 3.071 ± 1.247
0.0MetXaa: 0.0 ± 0.0
Asn
6.143AsnAla: 6.143 ± 3.134
0.0AsnCys: 0.0 ± 0.0
5.528AsnAsp: 5.528 ± 1.619
6.143AsnGlu: 6.143 ± 4.075
1.843AsnPhe: 1.843 ± 0.852
4.914AsnGly: 4.914 ± 3.032
1.843AsnHis: 1.843 ± 1.471
4.914AsnIle: 4.914 ± 1.383
4.3AsnLys: 4.3 ± 1.153
6.757AsnLeu: 6.757 ± 2.852
1.229AsnMet: 1.229 ± 0.605
6.757AsnAsn: 6.757 ± 1.696
6.143AsnPro: 6.143 ± 1.489
2.457AsnGln: 2.457 ± 1.777
3.071AsnArg: 3.071 ± 1.513
3.686AsnSer: 3.686 ± 0.738
1.843AsnThr: 1.843 ± 1.255
2.457AsnVal: 2.457 ± 0.526
0.0AsnTrp: 0.0 ± 0.0
4.3AsnTyr: 4.3 ± 0.682
0.0AsnXaa: 0.0 ± 0.0
Pro
2.457ProAla: 2.457 ± 1.146
0.0ProCys: 0.0 ± 0.0
1.843ProAsp: 1.843 ± 1.471
0.614ProGlu: 0.614 ± 0.466
0.614ProPhe: 0.614 ± 0.49
0.614ProGly: 0.614 ± 0.466
1.843ProHis: 1.843 ± 1.471
2.457ProIle: 2.457 ± 1.23
4.3ProLys: 4.3 ± 0.933
4.3ProLeu: 4.3 ± 1.804
1.843ProMet: 1.843 ± 1.0
2.457ProAsn: 2.457 ± 1.146
1.229ProPro: 1.229 ± 1.149
1.229ProGln: 1.229 ± 0.605
1.843ProArg: 1.843 ± 1.255
0.614ProSer: 0.614 ± 0.466
1.843ProThr: 1.843 ± 2.155
0.614ProVal: 0.614 ± 0.648
0.614ProTrp: 0.614 ± 0.466
2.457ProTyr: 2.457 ± 1.23
0.0ProXaa: 0.0 ± 0.0
Gln
3.686GlnAla: 3.686 ± 3.052
0.614GlnCys: 0.614 ± 0.648
3.686GlnAsp: 3.686 ± 0.96
1.843GlnGlu: 1.843 ± 0.891
1.843GlnPhe: 1.843 ± 0.852
2.457GlnGly: 2.457 ± 0.526
0.0GlnHis: 0.0 ± 0.0
3.071GlnIle: 3.071 ± 0.893
2.457GlnLys: 2.457 ± 1.777
3.071GlnLeu: 3.071 ± 1.293
0.614GlnMet: 0.614 ± 0.648
4.3GlnAsn: 4.3 ± 2.92
2.457GlnPro: 2.457 ± 2.162
3.686GlnGln: 3.686 ± 1.378
1.229GlnArg: 1.229 ± 0.597
1.843GlnSer: 1.843 ± 1.154
0.614GlnThr: 0.614 ± 0.648
4.914GlnVal: 4.914 ± 0.771
1.843GlnTrp: 1.843 ± 0.809
1.843GlnTyr: 1.843 ± 0.852
0.0GlnXaa: 0.0 ± 0.0
Arg
1.843ArgAla: 1.843 ± 0.276
0.0ArgCys: 0.0 ± 0.0
3.686ArgAsp: 3.686 ± 0.738
1.843ArgGlu: 1.843 ± 1.154
3.071ArgPhe: 3.071 ± 1.452
1.229ArgGly: 1.229 ± 0.981
0.614ArgHis: 0.614 ± 0.49
4.914ArgIle: 4.914 ± 2.046
3.071ArgLys: 3.071 ± 1.442
4.3ArgLeu: 4.3 ± 1.121
3.686ArgMet: 3.686 ± 2.227
4.914ArgAsn: 4.914 ± 1.942
0.614ArgPro: 0.614 ± 0.466
2.457ArgGln: 2.457 ± 1.211
2.457ArgArg: 2.457 ± 0.526
2.457ArgSer: 2.457 ± 0.961
3.686ArgThr: 3.686 ± 0.96
1.843ArgVal: 1.843 ± 1.397
0.0ArgTrp: 0.0 ± 0.0
3.686ArgTyr: 3.686 ± 1.441
0.0ArgXaa: 0.0 ± 0.0
Ser
1.843SerAla: 1.843 ± 0.852
0.614SerCys: 0.614 ± 0.466
3.686SerAsp: 3.686 ± 1.233
4.3SerGlu: 4.3 ± 1.971
4.3SerPhe: 4.3 ± 1.153
4.3SerGly: 4.3 ± 1.783
2.457SerHis: 2.457 ± 0.961
2.457SerIle: 2.457 ± 1.237
3.071SerLys: 3.071 ± 1.293
5.528SerLeu: 5.528 ± 0.828
1.843SerMet: 1.843 ± 1.045
1.843SerAsn: 1.843 ± 1.397
0.0SerPro: 0.0 ± 0.0
2.457SerGln: 2.457 ± 0.469
4.914SerArg: 4.914 ± 0.937
4.3SerSer: 4.3 ± 2.304
4.914SerThr: 4.914 ± 1.678
3.071SerVal: 3.071 ± 0.893
0.0SerTrp: 0.0 ± 0.0
3.686SerTyr: 3.686 ± 1.703
0.0SerXaa: 0.0 ± 0.0
Thr
6.143ThrAla: 6.143 ± 2.778
0.614ThrCys: 0.614 ± 0.49
7.371ThrAsp: 7.371 ± 4.908
1.229ThrGlu: 1.229 ± 0.48
0.614ThrPhe: 0.614 ± 0.49
5.528ThrGly: 5.528 ± 2.085
1.229ThrHis: 1.229 ± 0.981
5.528ThrIle: 5.528 ± 0.828
3.071ThrLys: 3.071 ± 0.897
4.914ThrLeu: 4.914 ± 2.239
0.614ThrMet: 0.614 ± 0.648
6.143ThrAsn: 6.143 ± 1.706
4.914ThrPro: 4.914 ± 0.827
4.3ThrGln: 4.3 ± 1.373
1.229ThrArg: 1.229 ± 0.605
1.229ThrSer: 1.229 ± 0.932
7.985ThrThr: 7.985 ± 3.989
1.229ThrVal: 1.229 ± 0.48
0.0ThrTrp: 0.0 ± 0.0
0.614ThrTyr: 0.614 ± 0.466
0.0ThrXaa: 0.0 ± 0.0
Val
3.071ValAla: 3.071 ± 2.145
1.229ValCys: 1.229 ± 0.48
3.686ValAsp: 3.686 ± 1.703
1.843ValGlu: 1.843 ± 1.154
3.071ValPhe: 3.071 ± 0.817
1.229ValGly: 1.229 ± 1.345
0.614ValHis: 0.614 ± 0.49
1.843ValIle: 1.843 ± 0.809
3.071ValLys: 3.071 ± 1.247
4.914ValLeu: 4.914 ± 2.46
0.0ValMet: 0.0 ± 0.0
5.528ValAsn: 5.528 ± 0.828
2.457ValPro: 2.457 ± 1.055
1.229ValGln: 1.229 ± 0.981
3.071ValArg: 3.071 ± 1.675
3.071ValSer: 3.071 ± 1.675
4.914ValThr: 4.914 ± 0.556
1.843ValVal: 1.843 ± 0.809
0.614ValTrp: 0.614 ± 0.466
1.229ValTyr: 1.229 ± 0.48
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.614TrpAsp: 0.614 ± 0.466
1.229TrpGlu: 1.229 ± 0.597
0.614TrpPhe: 0.614 ± 0.466
0.0TrpGly: 0.0 ± 0.0
0.614TrpHis: 0.614 ± 0.466
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.614TrpLeu: 0.614 ± 0.49
0.614TrpMet: 0.614 ± 0.466
1.843TrpAsn: 1.843 ± 1.156
0.0TrpPro: 0.0 ± 0.0
1.229TrpGln: 1.229 ± 0.48
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
1.229TrpThr: 1.229 ± 0.932
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.071TyrAla: 3.071 ± 2.093
0.0TyrCys: 0.0 ± 0.0
6.143TyrAsp: 6.143 ± 1.269
3.071TyrGlu: 3.071 ± 0.979
1.843TyrPhe: 1.843 ± 0.809
3.071TyrGly: 3.071 ± 0.893
3.071TyrHis: 3.071 ± 1.777
3.071TyrIle: 3.071 ± 1.777
2.457TyrLys: 2.457 ± 1.304
4.914TyrLeu: 4.914 ± 1.732
0.614TyrMet: 0.614 ± 0.648
4.3TyrAsn: 4.3 ± 2.703
1.229TyrPro: 1.229 ± 0.932
3.686TyrGln: 3.686 ± 1.618
3.686TyrArg: 3.686 ± 1.703
4.3TyrSer: 4.3 ± 1.331
3.071TyrThr: 3.071 ± 1.247
4.3TyrVal: 4.3 ± 0.879
0.0TyrTrp: 0.0 ± 0.0
5.528TyrTyr: 5.528 ± 1.524
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1629 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski