Albimonas donghaensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Albimonas

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4253 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3FFE6|A0A1H3FFE6_9RHOB Uncharacterized protein OS=Albimonas donghaensis OX=356660 GN=SAMN05444336_11287 PE=4 SV=1
MM1 pKa = 6.95GTFAVTYY8 pKa = 9.65GYY10 pKa = 10.79FSFGGWSSSKK20 pKa = 10.7GGYY23 pKa = 9.22SSSGKK28 pKa = 9.99CDD30 pKa = 2.73WGYY33 pKa = 11.52SSSSWGGSSKK43 pKa = 10.75GSSHH47 pKa = 6.64GSKK50 pKa = 10.5GWGGHH55 pKa = 5.38NKK57 pKa = 10.2SNDD60 pKa = 3.51CDD62 pKa = 2.98WGYY65 pKa = 11.24GSKK68 pKa = 10.88GGGGGSKK75 pKa = 9.93KK76 pKa = 9.71HH77 pKa = 6.92DD78 pKa = 3.74SKK80 pKa = 11.45SWCDD84 pKa = 3.82DD85 pKa = 2.52GWGGSKK91 pKa = 10.64GGWGGSSWDD100 pKa = 3.45DD101 pKa = 3.76CGWGGGHH108 pKa = 6.55SGGGHH113 pKa = 6.22GGGHH117 pKa = 6.7GGGGHH122 pKa = 6.81GGGGHH127 pKa = 6.15GGGWGGGGWGGGWGCDD143 pKa = 3.42VNAEE147 pKa = 4.26PVFEE151 pKa = 5.39DD152 pKa = 4.2DD153 pKa = 4.73CNACIEE159 pKa = 4.19VTIDD163 pKa = 3.24EE164 pKa = 4.4NTLAVIDD171 pKa = 5.1LDD173 pKa = 3.87ATDD176 pKa = 4.92ADD178 pKa = 4.68GDD180 pKa = 4.05TLTYY184 pKa = 9.9EE185 pKa = 4.07ISGGDD190 pKa = 3.57DD191 pKa = 2.99AALFTVDD198 pKa = 3.94PATGEE203 pKa = 4.09LTFIDD208 pKa = 4.63APDD211 pKa = 4.06FEE213 pKa = 6.46APLDD217 pKa = 4.03ADD219 pKa = 3.62GDD221 pKa = 3.84NVYY224 pKa = 10.64DD225 pKa = 3.87VKK227 pKa = 11.6VKK229 pKa = 9.67VTDD232 pKa = 3.9GEE234 pKa = 4.51GGSDD238 pKa = 3.56EE239 pKa = 5.22ACVKK243 pKa = 10.79VEE245 pKa = 4.37VEE247 pKa = 4.95DD248 pKa = 5.04VDD250 pKa = 4.24DD251 pKa = 4.48TPPPSGGGACQFTLSQDD268 pKa = 3.39GLDD271 pKa = 3.81IEE273 pKa = 4.64VHH275 pKa = 5.07LTEE278 pKa = 5.48LPDD281 pKa = 3.85GSVQIEE287 pKa = 4.25LAVADD292 pKa = 4.96DD293 pKa = 3.89SAKK296 pKa = 11.02VGDD299 pKa = 3.68LRR301 pKa = 11.84GLFFHH306 pKa = 6.78VADD309 pKa = 4.11EE310 pKa = 4.45SKK312 pKa = 10.56IGGLRR317 pKa = 11.84ITGDD321 pKa = 3.79DD322 pKa = 3.52VTGTQYY328 pKa = 11.29CEE330 pKa = 4.97DD331 pKa = 3.8RR332 pKa = 11.84VKK334 pKa = 11.26DD335 pKa = 4.09LGWGANVSGLGRR347 pKa = 11.84FDD349 pKa = 4.81AGVKK353 pKa = 10.3LGTSGIGKK361 pKa = 9.83DD362 pKa = 4.23DD363 pKa = 3.4IRR365 pKa = 11.84STTLVISHH373 pKa = 7.88PDD375 pKa = 3.28GMSLDD380 pKa = 4.03DD381 pKa = 5.77FRR383 pKa = 11.84NQDD386 pKa = 3.08FAIRR390 pKa = 11.84ATSVGYY396 pKa = 10.13EE397 pKa = 4.15GGWRR401 pKa = 11.84GDD403 pKa = 3.53SEE405 pKa = 5.24KK406 pKa = 10.7IGGNAGEE413 pKa = 4.66LDD415 pKa = 3.85CGGANANSAPIAVDD429 pKa = 4.35DD430 pKa = 4.51EE431 pKa = 5.14GGLCSTDD438 pKa = 2.77ATLIDD443 pKa = 3.94VLANDD448 pKa = 4.19SDD450 pKa = 4.27ADD452 pKa = 3.91PDD454 pKa = 4.25EE455 pKa = 4.26VWGLLGIKK463 pKa = 8.84TDD465 pKa = 3.49AGIEE469 pKa = 4.11FMTDD473 pKa = 2.66GDD475 pKa = 4.97SFTLDD480 pKa = 2.66SGAVVTRR487 pKa = 11.84VGDD490 pKa = 3.45AFEE493 pKa = 4.81YY494 pKa = 10.73DD495 pKa = 3.43LSGTGDD501 pKa = 3.92DD502 pKa = 5.45FDD504 pKa = 4.52TLLVGQKK511 pKa = 10.39GADD514 pKa = 3.21SFEE517 pKa = 4.2YY518 pKa = 10.91VIGDD522 pKa = 3.89DD523 pKa = 5.01EE524 pKa = 4.71GATDD528 pKa = 3.3IGEE531 pKa = 4.22VVIDD535 pKa = 3.25ICGGVNAVEE544 pKa = 6.1LIDD547 pKa = 4.6NDD549 pKa = 3.98NPLLASMDD557 pKa = 3.93LGQVLDD563 pKa = 3.91PVSWLVEE570 pKa = 4.22TVNAAVDD577 pKa = 4.13FDD579 pKa = 3.93EE580 pKa = 4.79TAAEE584 pKa = 4.05ALLDD588 pKa = 4.24LGALGLTDD596 pKa = 4.25HH597 pKa = 7.2GIDD600 pKa = 3.64GLFGPAYY607 pKa = 10.06CVDD610 pKa = 3.37RR611 pKa = 11.84TRR613 pKa = 11.84PANYY617 pKa = 9.15DD618 pKa = 3.14ATDD621 pKa = 3.45ALVYY625 pKa = 10.08TSTGDD630 pKa = 3.32IPDD633 pKa = 3.56VNFDD637 pKa = 3.7GGDD640 pKa = 3.67VIDD643 pKa = 5.39KK644 pKa = 10.83EE645 pKa = 4.46EE646 pKa = 4.65NLDD649 pKa = 3.7NLNWLLSQRR658 pKa = 11.84YY659 pKa = 7.91EE660 pKa = 4.13DD661 pKa = 3.31QGYY664 pKa = 9.7GYY666 pKa = 9.07TDD668 pKa = 3.11IQSAIWQLMDD678 pKa = 4.11DD679 pKa = 3.99VGGIDD684 pKa = 3.73TSRR687 pKa = 11.84STPGVQLTAAAQTMYY702 pKa = 10.65DD703 pKa = 3.1AAMANGDD710 pKa = 3.63GFAPTGADD718 pKa = 3.19GDD720 pKa = 4.16VLGLIFQPVSDD731 pKa = 4.54NGSGGYY737 pKa = 9.24DD738 pKa = 3.02ANGQIFVVGYY748 pKa = 10.19DD749 pKa = 3.91LQDD752 pKa = 3.79CLCYY756 pKa = 10.58

Molecular weight: 77.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H3A3J3|A0A1H3A3J3_9RHOB Histidine kinase OS=Albimonas donghaensis OX=356660 GN=SAMN05444336_10423 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 9.21RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.48GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.42NGAKK29 pKa = 9.88IIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.25GRR39 pKa = 11.84HH40 pKa = 5.49KK41 pKa = 10.9LSAA44 pKa = 3.8

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4253

0

4253

1441178

31

9789

338.9

36.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.395 ± 0.082

0.817 ± 0.013

5.96 ± 0.052

5.999 ± 0.038

3.442 ± 0.019

9.762 ± 0.078

1.799 ± 0.018

4.259 ± 0.028

2.251 ± 0.036

9.971 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.576 ± 0.022

1.931 ± 0.023

5.964 ± 0.049

2.349 ± 0.022

7.777 ± 0.058

4.722 ± 0.035

4.819 ± 0.033

6.951 ± 0.035

1.424 ± 0.018

1.83 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski