Xylanimicrobium sp. FW10M-9

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Promicromonosporaceae; Xylanimicrobium; unclassified Xylanimicrobium

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3305 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P6F139|A0A4P6F139_9MICO ATP synthase subunit delta OS=Xylanimicrobium sp. FW10M-9 OX=2509457 GN=atpH PE=3 SV=1
MM1 pKa = 7.74RR2 pKa = 11.84KK3 pKa = 7.71VTYY6 pKa = 10.25ALAAAAVVAGLAGCASGSSGDD27 pKa = 4.18SGDD30 pKa = 3.81SGATEE35 pKa = 4.41APSVAAGTVLTTADD49 pKa = 3.73SDD51 pKa = 3.71LGRR54 pKa = 11.84IVVDD58 pKa = 3.36KK59 pKa = 11.15DD60 pKa = 3.09GMAVYY65 pKa = 10.46VFGKK69 pKa = 8.43DD70 pKa = 3.43TPGSGASACTGDD82 pKa = 5.95CLAAWPPVHH91 pKa = 7.36ADD93 pKa = 2.83GDD95 pKa = 4.16TPKK98 pKa = 11.02AEE100 pKa = 4.29GVTGDD105 pKa = 4.11LGTIQGNDD113 pKa = 3.36GEE115 pKa = 4.6LQVTLDD121 pKa = 3.54GRR123 pKa = 11.84PLYY126 pKa = 10.56LYY128 pKa = 10.59AGDD131 pKa = 4.49GSPGDD136 pKa = 3.61VAGQGLNDD144 pKa = 4.36LWWVLAPSGEE154 pKa = 4.61EE155 pKa = 3.91VTQMPTTSSMPGYY168 pKa = 10.74

Molecular weight: 16.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V0YG46|A0A4V0YG46_9MICO NADH-quinone oxidoreductase subunit H OS=Xylanimicrobium sp. FW10M-9 OX=2509457 GN=nuoH PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3305

0

3305

1091220

20

2176

330.2

35.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.82 ± 0.069

0.546 ± 0.011

6.341 ± 0.037

5.015 ± 0.038

2.658 ± 0.027

9.306 ± 0.044

2.142 ± 0.019

2.955 ± 0.036

1.65 ± 0.029

10.234 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.594 ± 0.015

1.575 ± 0.023

5.949 ± 0.035

2.678 ± 0.022

7.743 ± 0.046

4.775 ± 0.027

6.42 ± 0.04

10.174 ± 0.045

1.612 ± 0.019

1.815 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski