Mycoplasma parvum str. Indiana

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma parvum

Average proteome isoelectric point is 7.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 580 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U5ND49|U5ND49_9MOLU HD_domain domain-containing protein OS=Mycoplasma parvum str. Indiana OX=1403316 GN=PRV_02675 PE=4 SV=1
MM1 pKa = 7.61SKK3 pKa = 10.85LSLRR7 pKa = 11.84TLISIANDD15 pKa = 3.06VAIEE19 pKa = 4.15SFGEE23 pKa = 4.15SSFTFSSLWAKK34 pKa = 8.74TWTKK38 pKa = 11.1AKK40 pKa = 10.41DD41 pKa = 3.74FKK43 pKa = 11.25KK44 pKa = 10.81EE45 pKa = 4.1NIEE48 pKa = 3.87DD49 pKa = 4.3WISSFYY55 pKa = 11.25LEE57 pKa = 4.31VLGDD61 pKa = 3.58PRR63 pKa = 11.84FVYY66 pKa = 10.24IGNNMWKK73 pKa = 9.94LRR75 pKa = 11.84EE76 pKa = 3.95FMGLAEE82 pKa = 4.18YY83 pKa = 10.37LKK85 pKa = 11.29VMGKK89 pKa = 9.49RR90 pKa = 11.84SKK92 pKa = 11.12NIVFSEE98 pKa = 4.17KK99 pKa = 10.83DD100 pKa = 3.3LDD102 pKa = 4.77DD103 pKa = 4.71EE104 pKa = 5.23DD105 pKa = 5.04SSSLEE110 pKa = 3.94EE111 pKa = 4.03TTEE114 pKa = 3.95EE115 pKa = 4.56LKK117 pKa = 11.18DD118 pKa = 3.93EE119 pKa = 4.31EE120 pKa = 5.94DD121 pKa = 3.75EE122 pKa = 6.25DD123 pKa = 4.99SDD125 pKa = 5.04LDD127 pKa = 4.5SEE129 pKa = 4.78EE130 pKa = 4.9EE131 pKa = 4.25DD132 pKa = 5.15DD133 pKa = 4.59SSSSNKK139 pKa = 9.76EE140 pKa = 3.66YY141 pKa = 11.11EE142 pKa = 4.25EE143 pKa = 4.19NEE145 pKa = 3.93EE146 pKa = 4.27LGQEE150 pKa = 4.13GSGYY154 pKa = 9.16QGRR157 pKa = 11.84IKK159 pKa = 10.91SNEE162 pKa = 3.95EE163 pKa = 3.18EE164 pKa = 4.33DD165 pKa = 4.03EE166 pKa = 4.45EE167 pKa = 5.11SFEE170 pKa = 4.37

Molecular weight: 19.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U5NCV4|U5NCV4_9MOLU DUF31 domain-containing protein OS=Mycoplasma parvum str. Indiana OX=1403316 GN=PRV_02160 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.7QPKK8 pKa = 8.28KK9 pKa = 8.32RR10 pKa = 11.84KK11 pKa = 9.02RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 6.31GFLKK20 pKa = 10.62RR21 pKa = 11.84ISTKK25 pKa = 9.92SGRR28 pKa = 11.84NILSARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.47GRR39 pKa = 11.84KK40 pKa = 7.94QLTVSSEE47 pKa = 3.79

Molecular weight: 5.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

580

0

580

166707

29

2645

287.4

33.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.74 ± 0.069

1.136 ± 0.033

4.206 ± 0.063

8.339 ± 0.116

5.897 ± 0.105

5.246 ± 0.111

1.343 ± 0.033

8.637 ± 0.086

11.246 ± 0.105

10.443 ± 0.113

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.58 ± 0.031

7.005 ± 0.096

2.536 ± 0.044

3.264 ± 0.061

3.458 ± 0.064

8.237 ± 0.092

3.961 ± 0.063

4.417 ± 0.084

1.729 ± 0.05

3.58 ± 0.061
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski