Changjiang tombus-like virus 9

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KFV5|A0A1L3KFV5_9VIRU Capsid protein OS=Changjiang tombus-like virus 9 OX=1922823 PE=3 SV=1
MM1 pKa = 7.64SFFEE5 pKa = 4.45LLRR8 pKa = 11.84AFLCCATADD17 pKa = 3.75SGEE20 pKa = 4.08VKK22 pKa = 10.0MDD24 pKa = 3.33VAKK27 pKa = 9.89TLLRR31 pKa = 11.84EE32 pKa = 4.33DD33 pKa = 4.77CLATDD38 pKa = 4.49NIEE41 pKa = 4.1FTHH44 pKa = 6.87DD45 pKa = 3.63PKK47 pKa = 10.59EE48 pKa = 3.95HH49 pKa = 6.21HH50 pKa = 5.52VTRR53 pKa = 11.84RR54 pKa = 11.84PAGVRR59 pKa = 11.84VTDD62 pKa = 3.49NRR64 pKa = 11.84EE65 pKa = 3.61ISPLEE70 pKa = 3.88PRR72 pKa = 11.84AGLPVKK78 pKa = 10.18KK79 pKa = 9.8CAYY82 pKa = 8.25RR83 pKa = 11.84AEE85 pKa = 4.1MDD87 pKa = 3.57VLRR90 pKa = 11.84KK91 pKa = 9.75LRR93 pKa = 11.84LAAEE97 pKa = 4.37DD98 pKa = 3.44AFGRR102 pKa = 11.84QQEE105 pKa = 4.41KK106 pKa = 10.24KK107 pKa = 10.17QPDD110 pKa = 4.03PVTQHH115 pKa = 7.02RR116 pKa = 11.84LEE118 pKa = 4.42CVLNKK123 pKa = 9.46ATLAAFKK130 pKa = 10.92VVGATHH136 pKa = 5.86QCEE139 pKa = 4.32SWSLLVAIGEE149 pKa = 4.31LQLDD153 pKa = 3.87MTHH156 pKa = 6.65TRR158 pKa = 11.84SEE160 pKa = 3.85WKK162 pKa = 10.05RR163 pKa = 11.84RR164 pKa = 11.84LLRR167 pKa = 11.84LGEE170 pKa = 4.16LCSIEE175 pKa = 5.15SGCEE179 pKa = 3.59WEE181 pKa = 5.15VEE183 pKa = 4.3GNPPGLASEE192 pKa = 4.13PHH194 pKa = 6.37PPSGEE199 pKa = 4.06VPVPTDD205 pKa = 2.99QPTGVHH211 pKa = 6.68RR212 pKa = 11.84LCHH215 pKa = 6.11DD216 pKa = 3.61VVEE219 pKa = 5.18VKK221 pKa = 10.19AHH223 pKa = 4.96RR224 pKa = 11.84RR225 pKa = 11.84IRR227 pKa = 11.84KK228 pKa = 9.11DD229 pKa = 3.03RR230 pKa = 11.84EE231 pKa = 3.85GQYY234 pKa = 10.09VGTVVRR240 pKa = 11.84EE241 pKa = 3.8LKK243 pKa = 10.81NRR245 pKa = 11.84FGCPKK250 pKa = 8.82PTEE253 pKa = 4.56DD254 pKa = 3.55NLLAVRR260 pKa = 11.84RR261 pKa = 11.84SAINIMEE268 pKa = 4.16KK269 pKa = 10.22HH270 pKa = 5.65GVRR273 pKa = 11.84PSHH276 pKa = 6.77VGEE279 pKa = 4.2VVDD282 pKa = 4.98LVVAGVFVPDD292 pKa = 3.53RR293 pKa = 11.84NEE295 pKa = 3.15IRR297 pKa = 11.84AANVLASNRR306 pKa = 11.84ARR308 pKa = 11.84ALRR311 pKa = 11.84RR312 pKa = 11.84EE313 pKa = 4.13IANAGPSTVYY323 pKa = 10.84SKK325 pKa = 9.68MWTKK329 pKa = 10.41VRR331 pKa = 11.84DD332 pKa = 3.98VVWPDD337 pKa = 2.92GALPGFLEE345 pKa = 4.72DD346 pKa = 3.83PGRR349 pKa = 11.84AXGGLSVVHH358 pKa = 6.76GISHH362 pKa = 5.81KK363 pKa = 9.72TGLRR367 pKa = 11.84DD368 pKa = 3.24VRR370 pKa = 11.84ISVDD374 pKa = 2.71RR375 pKa = 11.84HH376 pKa = 4.59ARR378 pKa = 11.84AEE380 pKa = 3.83PRR382 pKa = 11.84PRR384 pKa = 11.84RR385 pKa = 11.84LYY387 pKa = 10.63SIKK390 pKa = 10.22EE391 pKa = 3.66LSANRR396 pKa = 11.84DD397 pKa = 3.42LGVNNADD404 pKa = 3.82INTLEE409 pKa = 4.35CALLEE414 pKa = 3.92RR415 pKa = 11.84MYY417 pKa = 10.3YY418 pKa = 10.36CEE420 pKa = 3.99VGGDD424 pKa = 4.14FVAPPPVDD432 pKa = 3.22PGRR435 pKa = 11.84FTEE438 pKa = 4.24RR439 pKa = 11.84LAGFKK444 pKa = 10.27AALLSNVPEE453 pKa = 4.12PTVMSCEE460 pKa = 4.13EE461 pKa = 4.0VVATYY466 pKa = 10.32SGRR469 pKa = 11.84RR470 pKa = 11.84NTIYY474 pKa = 10.72RR475 pKa = 11.84NALNRR480 pKa = 11.84LTQIGLSRR488 pKa = 11.84SDD490 pKa = 3.05AHH492 pKa = 7.28SIAFVKK498 pKa = 10.19MEE500 pKa = 4.78LVDD503 pKa = 3.39PCKK506 pKa = 10.46APRR509 pKa = 11.84CIQPRR514 pKa = 11.84KK515 pKa = 8.96PVYY518 pKa = 9.73NLCLGRR524 pKa = 11.84FIKK527 pKa = 10.61SVEE530 pKa = 3.47HH531 pKa = 6.99DD532 pKa = 3.3IYY534 pKa = 11.12RR535 pKa = 11.84GIQKK539 pKa = 8.48TFGDD543 pKa = 4.77GPTVMKK549 pKa = 10.2GYY551 pKa = 9.96NVSDD555 pKa = 3.3IGRR558 pKa = 11.84IARR561 pKa = 11.84GKK563 pKa = 8.84WRR565 pKa = 11.84TFKK568 pKa = 11.0KK569 pKa = 10.13PVAIGLDD576 pKa = 3.17AKK578 pKa = 10.7KK579 pKa = 10.7FDD581 pKa = 3.49MHH583 pKa = 7.85VSEE586 pKa = 5.74EE587 pKa = 4.04ALLWEE592 pKa = 4.62HH593 pKa = 6.7GVYY596 pKa = 10.63LDD598 pKa = 5.37LFRR601 pKa = 11.84HH602 pKa = 5.07NPKK605 pKa = 10.33LKK607 pKa = 10.4RR608 pKa = 11.84LLEE611 pKa = 4.03WQVDD615 pKa = 3.57NKK617 pKa = 11.1GAGFCKK623 pKa = 10.25DD624 pKa = 3.02GKK626 pKa = 10.23LKK628 pKa = 10.63YY629 pKa = 9.42RR630 pKa = 11.84VRR632 pKa = 11.84GRR634 pKa = 11.84RR635 pKa = 11.84FSGDD639 pKa = 3.06MNTGLGNCLLMSAMVYY655 pKa = 10.32AYY657 pKa = 10.38AKK659 pKa = 10.55DD660 pKa = 3.29RR661 pKa = 11.84GVGVKK666 pKa = 10.12LLNNGDD672 pKa = 3.98DD673 pKa = 3.9CVVMLEE679 pKa = 4.69SADD682 pKa = 3.65LQQFVTGLDD691 pKa = 3.09EE692 pKa = 4.31WFLEE696 pKa = 3.93MGFRR700 pKa = 11.84MVAEE704 pKa = 4.04EE705 pKa = 4.21PVYY708 pKa = 10.55KK709 pKa = 10.63LHH711 pKa = 7.25QIEE714 pKa = 4.81FCQMHH719 pKa = 7.29PIEE722 pKa = 6.36IGDD725 pKa = 3.79EE726 pKa = 3.92CRR728 pKa = 11.84MVRR731 pKa = 11.84NIPSTLRR738 pKa = 11.84KK739 pKa = 8.88DD740 pKa = 3.58TLTVHH745 pKa = 6.91PLSNQKK751 pKa = 9.46HH752 pKa = 4.82RR753 pKa = 11.84EE754 pKa = 3.94KK755 pKa = 10.18WCTAVGMGGLALTGGVPIMQDD776 pKa = 3.7FYY778 pKa = 11.91QMFQRR783 pKa = 11.84IGCNRR788 pKa = 11.84SSNIANDD795 pKa = 3.58PTFATGLRR803 pKa = 11.84LMSKK807 pKa = 10.31GMAEE811 pKa = 4.89HH812 pKa = 6.39YY813 pKa = 10.05RR814 pKa = 11.84EE815 pKa = 4.37PDD817 pKa = 2.41PWTRR821 pKa = 11.84VQVFEE826 pKa = 4.35AWGITPDD833 pKa = 3.38EE834 pKa = 4.08QKK836 pKa = 10.93AIEE839 pKa = 4.31RR840 pKa = 11.84YY841 pKa = 9.55YY842 pKa = 11.15RR843 pKa = 11.84DD844 pKa = 3.76FSLSDD849 pKa = 3.3QPVSGEE855 pKa = 3.87QANVRR860 pKa = 11.84CHH862 pKa = 7.38LLLQLL867 pKa = 4.53

Molecular weight: 97.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KFV5|A0A1L3KFV5_9VIRU Capsid protein OS=Changjiang tombus-like virus 9 OX=1922823 PE=3 SV=1
MM1 pKa = 7.44PPVVAAVKK9 pKa = 10.39AGEE12 pKa = 4.31LRR14 pKa = 11.84QQKK17 pKa = 10.74YY18 pKa = 10.88NMVKK22 pKa = 10.35KK23 pKa = 10.56ANKK26 pKa = 9.43KK27 pKa = 7.4MKK29 pKa = 9.21KK30 pKa = 7.63TIKK33 pKa = 9.28VAKK36 pKa = 8.93KK37 pKa = 9.46KK38 pKa = 11.05SEE40 pKa = 3.65ITEE43 pKa = 4.06LGRR46 pKa = 11.84VLRR49 pKa = 11.84TLGGIGGGFAGGMIGQGAAGSAVGTGLGAAVSRR82 pKa = 11.84WLGQGDD88 pKa = 4.02YY89 pKa = 10.89SVTSNSVLRR98 pKa = 11.84AATTVPSMHH107 pKa = 7.02KK108 pKa = 10.03NDD110 pKa = 3.34QTVVVRR116 pKa = 11.84HH117 pKa = 5.82KK118 pKa = 10.87EE119 pKa = 3.87FVGEE123 pKa = 4.23LRR125 pKa = 11.84GNQNFTVAYY134 pKa = 9.41RR135 pKa = 11.84YY136 pKa = 10.34SLNPGIALTFPWLHH150 pKa = 6.71SIAAQYY156 pKa = 10.38SEE158 pKa = 3.69YY159 pKa = 10.21RR160 pKa = 11.84IRR162 pKa = 11.84GMVFHH167 pKa = 6.44YY168 pKa = 10.68VPTSGASVASSNTALGSVMFQTSYY192 pKa = 10.67RR193 pKa = 11.84ASEE196 pKa = 4.15NPPGSKK202 pKa = 8.86IEE204 pKa = 3.93MMNEE208 pKa = 3.32YY209 pKa = 8.79WASEE213 pKa = 3.76GRR215 pKa = 11.84PCDD218 pKa = 3.97EE219 pKa = 4.11FCHH222 pKa = 6.84PIEE225 pKa = 5.36CDD227 pKa = 3.21PKK229 pKa = 9.53EE230 pKa = 4.09NPFNVQYY237 pKa = 11.03VRR239 pKa = 11.84TGGLPAGEE247 pKa = 4.2NLLMYY252 pKa = 10.55DD253 pKa = 4.45LGTTTVAVTGMQTTGTVLGDD273 pKa = 3.17IWCTYY278 pKa = 7.91EE279 pKa = 5.08VEE281 pKa = 4.24LKK283 pKa = 10.57KK284 pKa = 10.68PKK286 pKa = 9.33LTGLNTEE293 pKa = 4.45ATRR296 pKa = 11.84SLYY299 pKa = 11.05SNSSTGITNANPLGSGPVLSTIDD322 pKa = 3.4GVSAVGSQITFPGNLDD338 pKa = 3.19GKK340 pKa = 9.27YY341 pKa = 10.07VVVLTISGFTAAGGVTVMTSGPATLTSLAQAQGSASLSYY380 pKa = 10.7VAILEE385 pKa = 4.31FTGSVNTTLLTISLTTLTGATLSTLRR411 pKa = 11.84ITEE414 pKa = 4.06WNADD418 pKa = 3.66FAA420 pKa = 6.14

Molecular weight: 44.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1287

420

867

643.5

70.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.77 ± 0.554

2.176 ± 0.652

4.507 ± 1.261

6.138 ± 0.861

3.186 ± 0.175

8.702 ± 1.327

2.409 ± 0.65

3.807 ± 0.128

5.128 ± 0.195

8.936 ± 0.321

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.797 ± 0.032

4.118 ± 0.343

5.128 ± 0.449

2.953 ± 0.076

7.148 ± 1.908

5.905 ± 1.422

6.449 ± 2.275

8.625 ± 0.028

1.321 ± 0.07

2.72 ± 0.454
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski