Galactobacter caseinivorans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Galactobacter

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2599 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A496PHT0|A0A496PHT0_9MICC YhgE/Pip domain-containing protein OS=Galactobacter caseinivorans OX=2676123 GN=DWQ67_08730 PE=4 SV=1
MM1 pKa = 7.04TADD4 pKa = 3.12VHH6 pKa = 5.88QAQEE10 pKa = 4.39FYY12 pKa = 10.2GTLLGWEE19 pKa = 4.23FQGGDD24 pKa = 3.27EE25 pKa = 4.38EE26 pKa = 5.81KK27 pKa = 10.96YY28 pKa = 10.57GGYY31 pKa = 11.04LMAHH35 pKa = 6.69KK36 pKa = 10.55NGLPVAGMMQKK47 pKa = 9.91QPDD50 pKa = 4.18MADD53 pKa = 3.57MPDD56 pKa = 2.78VWTTYY61 pKa = 10.59LGSTSADD68 pKa = 3.19ASSAGALAAGGSVFFPPMDD87 pKa = 3.74VPDD90 pKa = 3.75QGIMGLVGDD99 pKa = 4.25TTGAAIGIWQPQPMSGFEE117 pKa = 4.0LTYY120 pKa = 10.84EE121 pKa = 4.15PGAPYY126 pKa = 9.87WFEE129 pKa = 4.2LFTRR133 pKa = 11.84DD134 pKa = 3.95FAGAQAFYY142 pKa = 11.02RR143 pKa = 11.84EE144 pKa = 4.24AFDD147 pKa = 3.21WDD149 pKa = 3.42ITVVSDD155 pKa = 3.75SDD157 pKa = 3.43EE158 pKa = 3.91FRR160 pKa = 11.84YY161 pKa = 8.69ATLGKK166 pKa = 10.25DD167 pKa = 3.04ADD169 pKa = 3.94SRR171 pKa = 11.84AGIMDD176 pKa = 4.25ASAFLPQGVPDD187 pKa = 3.66HH188 pKa = 6.08WRR190 pKa = 11.84VYY192 pKa = 10.72LGVEE196 pKa = 4.25DD197 pKa = 4.52AVAAAKK203 pKa = 10.04QVVALGGAILSGPEE217 pKa = 3.7DD218 pKa = 3.76TPYY221 pKa = 10.2GTVVSIADD229 pKa = 3.47PTGAMVLLASGYY241 pKa = 9.37PGNGG245 pKa = 3.05

Molecular weight: 25.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A496PLD2|A0A496PLD2_9MICC Uncharacterized protein OS=Galactobacter caseinivorans OX=2676123 GN=DWQ67_00170 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2599

0

2599

856916

24

1971

329.7

35.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.519 ± 0.062

0.531 ± 0.01

5.508 ± 0.041

5.743 ± 0.051

2.92 ± 0.029

9.18 ± 0.041

2.078 ± 0.022

3.756 ± 0.04

2.643 ± 0.05

10.334 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.979 ± 0.02

2.098 ± 0.026

5.58 ± 0.042

3.522 ± 0.031

6.892 ± 0.055

5.967 ± 0.034

5.834 ± 0.034

8.601 ± 0.048

1.519 ± 0.02

1.795 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski